SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing-Reference-Cited by-同舟云学术

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Published:2012-05 Issue:5 Volume:19 Page:455-477
ISSN:1066-5277
Container-title:Journal of Computational Biology
language:en
Short-container-title:Journal of Computational Biology

Author:

Bankevich Anton¹²,Nurk Sergey¹²,Antipov Dmitry¹,Gurevich Alexey A.¹,Dvorkin Mikhail¹,Kulikov Alexander S.¹³,Lesin Valery M.¹,Nikolenko Sergey I.¹³,Pham Son⁴,Prjibelski Andrey D.¹,Pyshkin Alexey V.¹,Sirotkin Alexander V.¹,Vyahhi Nikolay¹,Tesler Glenn⁵,Alekseyev Max A.¹⁶,Pevzner Pavel A.¹⁴

Affiliation:

1. Algorithmic Biology Laboratory, St. Petersburg Academic University, Russian Academy of Sciences, St. Petersburg, Russia.

2. These authors contributed equally to this work.

3. Steklov Institute of Mathematics, St. Petersburg, Russia.

4. Department of Computer Science and Engineering, University of California, San Diego, La Jolla, California.

5. Department of Mathematics, University of California, San Diego, La Jolla, California.

6. Department of Computer Science and Engineering, University of South Carolina, Columbia, South Carolina.

Publisher

Mary Ann Liebert Inc

Subject

Computational Theory and Mathematics,Computational Mathematics,Genetics,Molecular Biology,Modeling and Simulation

Link

http://www.liebertpub.com/doi/pdf/10.1089/cmb.2012.0021

Reference40 articles.

1. Shotgun Protein Sequencing

2. Automated de novo protein sequencing of monoclonal antibodies

3. Genome of a Low-Salinity Ammonia-Oxidizing Archaeon Determined by Single-Cell and Metagenomic Analysis

4. ALLPATHS: De novo assembly of whole-genome shotgun microreads

5. De novo fragment assembly with short mate-paired reads: Does the read length matter?

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