einprot: flexible, easy-to-use, reproducible workflows for statistical analysis of quantitative proteomics data
Author:
Publisher
The Open Journal
Subject
General Earth and Planetary Sciences,General Environmental Science
Link
https://joss.theoj.org/papers/10.21105/joss.05750.pdf
Reference34 articles.
1. MSFragger: Ultrafast and comprehensive peptide identification in mass spectrometry-based proteomics;Kong;Nature Methods,2017
2. Optimizing proteomics data differential expression analysis via high-performing rules and ensemble inference;Peng;bioRxiv doi:10.1101/2023.06.26.546625,2023
3. Protti: An R package for comprehensive data analysis of peptide- and protein-centric bottom-up proteomics data;Quast;Bioinformatics Advances,2021
4. ProVision: A web-based platform for rapid analysis of proteomics data processed by MaxQuant;Gallant;Bioinformatics,2020
5. Eatomics: Shiny exploration of quantitative proteomics data;Kraus;Journal of Proteome Research,2021
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