A novel method reveals that solvent water favors polyproline II over β-strand conformation in peptides and unfolded proteins: conditional hydrophobic accessible surface area (CHASA)-Reference-Cited by-同舟云学术

A novel method reveals that solvent water favors polyproline II over β-strand conformation in peptides and unfolded proteins: conditional hydrophobic accessible surface area (CHASA)

Published:2009-01-01 Issue:1 Volume:14 Page:111-118
ISSN:0961-8368
Container-title:Protein Science
language:en
Short-container-title:Protein Science

Author:

Fleming Patrick J.,Fitzkee Nicholas C.,Mezei Mihaly,Srinivasan Rajgopal,Rose George D.

Publisher

Wiley

Subject

Molecular Biology,Biochemistry

Reference67 articles.

1. Microfolding: Conformational probability map for the alanine dipeptide in water from molecular dynamics simulations;Anderson;Proteins,1988

2. Calculation of conformational transitions and barriers in solvated systems: Application to the alanine dipeptide in water;Apostolakis;J. Chem. Phys.,1999

3. Role of backbone solvation and electrostatics in generating preferred peptide backbone conformations: Distributions of ϕ;Avbelj;Proc. Natl. Acad. Sci.,2003

4. Energetics of the interaction between water and the helical peptide group and its role in determining helix propensities;Avbelj;Proc. Natl. Acad. Sci.,2000

5. Prediction of binding energetics from structure using empirical parameterization;Baker;Methods Enzymol.,1998

Cited by 69 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Electronic Control of Polyproline II Helix Stability via the Identity of Acyl Capping Groups: the Pivaloyl Group Particularly Promotes PPII;Chemistry – A European Journal;2024-06-25

2. Generation of unfolded outer membrane protein ensembles defined by hydrodynamic properties;European Biophysics Journal;2023-03-11

3. Dipole Cooperativity and Polarization Frustration Determine the Secondary Structure Distribution of Short Alanine Peptides in Water;The Journal of Physical Chemistry B;2023-02-27

4. Exploring Nearest Neighbor Interactions and Their Influence on the Gibbs Energy Landscape of Unfolded Proteins and Peptides;International Journal of Molecular Sciences;2022-05-18

5. Solvation stabilizes intercarbonyl n→π* interactions and polyproline II helix;Physical Chemistry Chemical Physics;2022