<i>microshades</i> : An R Package for Improving Color Accessibility and Organization of Microbiome Data-Reference-Cited by-同舟云学术

microshades : An R Package for Improving Color Accessibility and Organization of Microbiome Data

Published:2022-11-17 Issue:11 Volume:11 Page:
ISSN:2576-098X
Container-title:Microbiology Resource Announcements
language:en
Short-container-title:Microbiol Resour Announc

Author:

Dahl Erin M.¹,Neer Emory¹,Bowie Kate R.²,Leung Eric T.¹,Karstens Lisa¹^ORCID

Affiliation:

1. Department of Medical Informatics and Clinical Epidemiology, Division of Bioinformatics and Computational Biomedicine, Oregon Health & Science University, Portland, Oregon, USA

2. Knight Cancer Institute, Cancer Early Detection Advanced Research Center, Oregon Health & Science University, Portland, Oregon, USA

Abstract

When creating figures, it is important to consider that individuals with color vision deficiency (CVD) may not perceive all colors. While there are several CVD-friendly color palettes, they are often insufficient for working with microbiome data. Here, we introduce microshades , an R package for creating CVD-accessible microbiome figures.

Funder

HHS | NIH | National Institute of Diabetes and Digestive and Kidney Diseases

HHS | NIH | U.S. National Library of Medicine

HHS | NIH | OSC | Common Fund

Publisher

American Society for Microbiology

Subject

Genetics,Immunology and Microbiology (miscellaneous),Molecular Biology

Link

https://journals.asm.org/doi/pdf/10.1128/mra.00795-22

Reference7 articles.

1. Colour vision deficiency

2. Okabe M Ito K. 2008. Color Universal Design (CUD): how to make figures and presentations that are friendly to colorblind people. https://jfly.uni-koeln.de/color.

3. colorspace: A Toolbox for Manipulating and Assessing Colors and Palettes

4. Krzywinski M. 2022. Designing for colorblindness. http://mkweb.bcgsc.ca/colorblind/palettes.mhtml.

5. Garnier S Ross N Rudis B Filipovic-Pierucci A Galili T Greenwell B Sievert C Harris DJ Chen JJ. 2021. Viridis: colorblind-friendly color maps for R. doi:10.5281/zenodo.4679424.

Cited by 21 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Microbiological analysis of tunneled hemodialysis catheters isolated from patients receiving hemodialysis in Saskatchewan;Future Microbiology;2024-08-16

2. Distinctive duodenal microbiomes and bile acid profiles in duodenal tumor patients revealed by prospective observational study;Scientific Reports;2024-08-12

3. Transforming environmental health datasets from the comparative toxicogenomics database into chord diagrams to visualize molecular mechanisms;Frontiers in Toxicology;2024-07-22

4. Appearance of green tea compounds in plasma following green tea consumption is modulated by the gut microbiome in mice;2024-07-16

5. A comparison of the breast milk microbiota from women diagnosed with gestational diabetes mellitus and women without gestational diabetes mellitus;BMC Pregnancy and Childbirth;2024-06-07