Genotypic Prediction of Human Immunodeficiency Virus Type 1 CRF02-AG Tropism-Reference-Cited by-同舟云学术

Genotypic Prediction of Human Immunodeficiency Virus Type 1 CRF02-AG Tropism

Published:2009-07 Issue:7 Volume:47 Page:2292-2294
ISSN:0095-1137
Container-title:Journal of Clinical Microbiology
language:en
Short-container-title:J Clin Microbiol

Author:

Raymond Stéphanie¹²³,Delobel Pierre¹⁴,Mavigner Maud¹,Cazabat Michelle¹³,Souyris Corinne¹³,Encinas Stéphanie¹³,Sandres-Sauné Karine¹²³,Pasquier Christophe¹²³,Marchou Bruno²⁴,Massip Patrice²⁴,Izopet Jacques¹²³

Affiliation:

1. INSERM, U563, Toulouse F-31300, France

2. Université Toulouse III Paul-Sabatier, Faculté de Médecine Toulouse-Purpan, Toulouse F-31300, France

3. CHU de Toulouse, Hôpital Purpan, Laboratoire de Virologie, Toulouse F-31300, France

4. CHU de Toulouse, Hôpital Purpan, Service des Maladies Infectieuses et Tropicales, Toulouse F-31300, France

Abstract

ABSTRACT We assessed the performance of genotypic algorithms for predicting the tropism of human immunodeficiency virus type 1 coreceptor usage in 52 patients infected with the CRF02-AG subtype. The combined criteria of the 11/25 and net charge rules accurately detected CXCR4-using CRF02-AG viruses, whereas the Geno2pheno tool lacked sensitivity and the position-specific scoring matrix (PSSM) tool WebPSSM lacked specificity.

Publisher

American Society for Microbiology

Subject

Microbiology (medical)

Link

https://journals.asm.org/doi/pdf/10.1128/JCM.02439-08

Reference16 articles.

1. CHEMOKINE RECEPTORS AS HIV-1 CORECEPTORS: Roles in Viral Entry, Tropism, and Disease

2. Brandful, J. A., M. E. Coetzer, T. Cilliers, M. Phoswa, M. A. Papathanasopoulos, L. Morris, and P. L. Moore. 2007. Phenotypic characterization of HIV type 1 isolates from Ghana. AIDS Res. Hum. Retrovir.23:144-152.

3. Briggs, D. R., D. L. Tuttle, J. W. Sleasman, and M. M. Goodenow. 2000. Envelope V3 amino acid sequence predicts HIV-1 phenotype (co-receptor usage and tropism for macrophages). AIDS14:2937-2939.

4. Minimal requirements for the human immunodeficiency virus type 1 V3 domain to support the syncytium-inducing phenotype: analysis by single amino acid substitution

5. Population-Based Sequencing of the V3 Region of env for Predicting the Coreceptor Usage of Human Immunodeficiency Virus Type 1 Quasispecies

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