Interlaboratory Comparison of Six Real-Time PCR Assays for Detection of Bovine Leukemia Virus Proviral DNA

Author:

Jaworski J. P.12ORCID,Pluta A.3,Rola-Łuszczak M.3,McGowan S. L.4,Finnegan C.4,Heenemann K.5,Carignano H. A.1,Alvarez I.12,Murakami K.6,Willems L.7,Vahlenkamp T. W.5,Trono K. G.12,Choudhury B.4,Kuźmak J.3

Affiliation:

1. Instituto Nacional de Tecnología Agropecuaria (INTA), CICVyA, Instituto de Virología, Buenos Aires, Argentina

2. Consejo Nacional de Investigaciones Científicas y Tecnológicas (CONICET), Buenos Aires, Argentina

3. National Veterinary Research Institute (NVRI), Pulawy, Poland

4. Animal and Plant Health Agency (APHA), Weybridge, United Kingdom

5. Institute of Virology, Center for Infectious Diseases, University of Leipzig, Leipzig, Germany

6. Department of Veterinary Medicine, Faculty of Agriculture, Iwate University, Morioka, Iwate, Japan

7. Gembloux Agro-Bio Tech and GIGA Institute, University of Liège, Liège, Belgium

Abstract

ABSTRACT Quantitative real-time PCR (qPCR) is increasingly being used for the detection of bovine leukemia virus (BLV) proviral DNA. Nevertheless, quality control for the validation and standardization of such tests is currently lacking. Therefore, the present study was initiated by three Office International des Epizooties (OIE) reference laboratories and three collaborating laboratories to measure the interlaboratory variability of six already developed and available BLV qPCR assays. For that purpose, an international panel of 58 DNA samples reflecting the dynamic range of the majority of the assays was distributed to six testing centers. Based on qualitative results, the overall agreement among all six laboratories was moderate. However, significant variability in the measurement of the BLV proviral DNA copy number was observed among different laboratories. Quantitative PCR assays, even when performed by experienced staff, can yield large variability in BLV proviral DNA copy numbers without harmonization. Further standardization of different factors (i.e., utilization of unified protocols and unique calibrators) should increase interlaboratory agreement.

Funder

KNOW (Leading National Research Centre) Scientific Consortium

Department for Environment, Food and Rural Affairs

Fonds National de la Recherche Scientifique

The Televie and Interuniversity Attraction Poles Program

Instituto Nacional de Tecnologia Agropecuaria

Consejo Nacional de Investigaciones Científicas y Técnicas

Publisher

American Society for Microbiology

Subject

Microbiology (medical)

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