Geography and Location Are the Primary Drivers of Office Microbiome Composition

Author:

Chase John12,Fouquier Jennifer3,Zare Mahnaz4,Sonderegger Derek L.5,Knight Rob67,Kelley Scott T.3,Siegel Jeffrey48,Caporaso J. Gregory12

Affiliation:

1. Department of Biological Sciences, Northern Arizona University, Flagstaff, Arizona, USA

2. Center for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, Arizona, USA

3. Department of Biology, San Diego State University, San Diego, California, USA

4. Department of Civil Engineering, University of Toronto, Toronto, Ontario, Canada

5. Department of Mathematics and Statistics, Northern Arizona University, Flagstaff, Arizona, USA

6. Department of Computer of Science, University of California San Diego, San Diego, California, USA

7. Department of Pediatrics, University of California San Diego, San Diego, California, USA

8. Dalla Lana School of Public Health, University of Toronto, Toronto, Ontario, Canada

Abstract

Our study highlights several points that should impact the design of future studies of the microbiology of BEs. First, projects tracking changes in BE bacterial communities should focus sampling efforts on surveying different locations in offices and in different cities but not necessarily different materials or different offices in the same city. Next, disturbance due to repeated sampling, though detectable, is small compared to that due to other variables, opening up a range of longitudinal study designs in the BE. Next, studies requiring more samples than can be sequenced on a single sequencing run (which is increasingly common) must control for run effects by including some of the same samples in all of the sequencing runs as technical replicates. Finally, detailed tracking of indoor and material environment covariates is likely not essential for BE microbiome studies, as the normal range of indoor environmental conditions is likely not large enough to impact bacterial communities.

Funder

Alfred P. Sloan Foundation

Publisher

American Society for Microbiology

Subject

Computer Science Applications,Genetics,Molecular Biology,Modeling and Simulation,Ecology, Evolution, Behavior and Systematics,Biochemistry,Physiology,Microbiology

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