Towards Translational Epidemiology: Next-Generation Sequencing and Phylogeography as Epidemiological Mainstays-Reference-Cited by-同舟云学术

Towards Translational Epidemiology: Next-Generation Sequencing and Phylogeography as Epidemiological Mainstays

Published:2019-06-25 Issue:3 Volume:4 Page:
ISSN:2379-5077
Container-title:mSystems
language:en
Short-container-title:mSystems

Author:

Hepp Crystal M.¹²

Affiliation:

1. School of Informatics, Computing, and Cyber Systems, Northern Arizona University, Flagstaff, Arizona, USA

2. The Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, USA

Abstract

Next-generation sequencing, coupled with the development of user-friendly software, has achieved a level of accessibility that is revolutionizing the way we approach epidemiological investigations. We can sequence pathogen genomes and conduct phylogenetic analyses to assess transmission, identify from which country or city a pathogen originated, or which contaminated potluck item resulted in widespread foodborne illness.

Publisher

American Society for Microbiology

Subject

Computer Science Applications,Genetics,Molecular Biology,Modelling and Simulation,Ecology, Evolution, Behavior and Systematics,Biochemistry,Physiology,Microbiology

Link

https://journals.asm.org/doi/pdf/10.1128/mSystems.00119-19

Reference15 articles.

1. Assessment of Arbovirus Surveillance 13 Years after Introduction of West Nile Virus, United States1

2. West Nile virus transmission and human infection risk in Veneto (Italy): a modelling analysis

3. US Food and Drug Administration. 2018. Environmental assessment of factors potentially contributing to the contamination of romaine lettuce implicated in a multi-state outbreak of E. coli O157:H7. US Food and Drug Administration, Silver Spring, MD. https://www.fda.gov/Food/RecallsOutbreaksEmergencies/Outbreaks/ucm624546.htm#II.

4. Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10

Cited by 2 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Integrating full and partial genome sequences to decipher the global spread of canine rabies virus;Nature Communications;2023-07-17

2. Deciphering the global spread of canine rabies virus in the modern era;2023-03-14