Direct RNA Sequencing Unfolds the Complex Transcriptome of Vibrio parahaemolyticus-Reference-Cited by-同舟云学术

Direct RNA Sequencing Unfolds the Complex Transcriptome of Vibrio parahaemolyticus

Published:2021-12-21 Issue:6 Volume:6 Page:
ISSN:2379-5077
Container-title:mSystems
language:en
Short-container-title:mSystems

Author:

Al kadi Mohamad¹,Ishii Eiji¹,Truong Dang Tat²,Motooka Daisuke²,Matsuda Shigeaki¹,Iida Tetsuya¹,Kodama Toshio¹³,Okuzaki Daisuke⁴⁵⁶⁷^ORCID

Affiliation:

1. Department of Bacterial Infections, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan

2. Department of Infection Metagenomics, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan

3. Bacteriology Department, Institute of Tropical Medicine, Nagasaki University, Nagasaki, Japan

4. Single Cell Genomics, Human Immunology, WPI Immunology Frontier Research Center, Osaka University, Osaka, Japan

5. Genome Information Research Center, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan

6. Institute for Open and Transdisciplinary Research Initiatives, Osaka University, Osaka, Japan

7. Center for Infectious Disease Education and Research (CiDER), Osaka University, Osaka, Japan

Abstract

Vibrio parahaemolyticus is a halophilic bacterium found in the marine environment. Outbreaks of gastroenteritis resulting from seafood poisoning by these pathogens have risen over the past 2 decades.

Funder

Japan Agency for Medical Research and Development

MEXT | Japan Science and Technology Agency

MEXT | Japan Society for the Promotion of Science

Takeda Science Foundation

Uehara Memorial Foundation

Publisher

American Society for Microbiology

Subject

Computer Science Applications,Genetics,Molecular Biology,Modeling and Simulation,Ecology, Evolution, Behavior and Systematics,Biochemistry,Physiology,Microbiology

Link

https://journals.asm.org/doi/pdf/10.1128/mSystems.00996-21

Reference48 articles.

1. Whole-Genome Random Sequencing and Assembly of Haemophilus influenzae Rd

2. Next-generation genome annotation: we still struggle to get it right

3. A computational system for identifying operons based on RNA-seq data

4. RNA-Seq: a revolutionary tool for transcriptomics

5. Effects of GC Bias in Next-Generation-Sequencing Data on De Novo Genome Assembly

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