Chromosome-scale genome assembly of an acidophilic microalga <i>Tetratostichococcus</i> sp. P1 isolated from a tropical peatland in Malaysia-Reference-Cited by-同舟云学术

Chromosome-scale genome assembly of an acidophilic microalga Tetratostichococcus sp. P1 isolated from a tropical peatland in Malaysia

Published:2024-02-15 Issue:2 Volume:13 Page:
ISSN:2576-098X
Container-title:Microbiology Resource Announcements
language:en
Short-container-title:Microbiol Resour Announc

Author:

Maeda Yoshiaki¹^ORCID,Hirakawa Toshiki²,Suzuki Shigekatsu³,Suhaimi Noraiza⁴,Shamsol Anuar Nurul Syahirah⁴,Yoneda Kohei¹,Shintani Masaki⁵,Suzuki Kenshi⁴,Sunagawa Naoki⁶,Kawachi Masanobu³,Suzuki Iwane¹,Hara Hirofumi⁴⁷⁸^ORCID

Affiliation:

1. Institute of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Japan

2. Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Japan

3. Biodiversity Division, National Institute for Environmental Studies, Tsukuba, Japan

4. Department of Biotechnology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan

5. Department of Engineering, Graduate School of Integrated Science and Technology, Shizuoka University, Shizuoka, Japan

6. Department of Biomaterial Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan

7. School of Integrative and Global Majors, University of Tsukuba, Tsukuba, Japan

8. Department of Chemical and Environmental Engineering, Malaysia-Japan International Institute of Technology, Universiti Teknologi Malaysia, Kuala Lumpur, Malaysia

Funder

MEXT | Japan Society for the Promotion of Science

Publisher

American Society for Microbiology

Link

https://journals.asm.org/doi/pdf/10.1128/mra.00816-23

Reference5 articles.

1. Isolation and characterization of acid-tolerant Stichococcus-like Microalga (Tetratostichococcus sp. P1) from a tropical peatland in Malaysia

2. https://github.com/rrwick/Filtlong

3. Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm

4. https://github.com/nextgenusfs/funannotate

5. BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS: Table 1.