Population Structure of Mycobacterium bovis in Germany: a Long-Term Study Using Whole-Genome Sequencing Combined with Conventional Molecular Typing Methods-Reference-Cited by-同舟云学术

Population Structure of Mycobacterium bovis in Germany: a Long-Term Study Using Whole-Genome Sequencing Combined with Conventional Molecular Typing Methods

Published:2020-10-21 Issue:11 Volume:58 Page:
ISSN:0095-1137
Container-title:Journal of Clinical Microbiology
language:en
Short-container-title:J Clin Microbiol

Author:

Kohl Thomas A.¹²^ORCID,Kranzer Katharina³⁴^ORCID,Andres Sönke³,Wirth Thierry⁵⁶,Niemann Stefan¹²,Moser Irmgard⁷^ORCID

Affiliation:

1. Molecular and Experimental Mycobacteriology, Research Center Borstel, Borstel, Germany

2. German Center for Infection Research (DZIF), partner site Hamburg-Lübeck-Borstel, Borstel, Germany

3. Division of Mycobacteriology (National Tuberculosis Reference Laboratory), Research Center Borstel, Borstel, Germany

4. Clinical Research Department, London School of Hygiene & Tropical Medicine, London, England

5. Laboratoire Biologie Intégrative des Populations, Evolution Moléculaire, EPHE, PSL University, Paris, France

6. Institut de Systématique, Evolution, Biodiversité, UMR-CNRS 7205, Muséum National d’Histoire Naturelle, Université Pierre et Marie Curie, Université des Antilles, Ecole Pratique des Hautes Etudes, Sorbonne Universités, Paris, France

7. Friedrich-Loeffler-Institut, Federal Institute for Animal Health, Institute of Molecular Pathogenesis, Jena, Germany

Abstract

Mycobacterium bovis is the primary cause of bovine tuberculosis (bTB) and infects a wide range of domestic animal and wildlife species and humans. In Germany, bTB still emerges sporadically in cattle herds, free-ranging wildlife, diverse captive animal species, and humans. In order to understand the underlying population structure and estimate the population size fluctuation through time, we analyzed 131 M. bovis strains from animals ( n = 38) and humans ( n = 93) in Germany from 1999 to 2017 by whole-genome sequencing (WGS), mycobacterial interspersed repetitive-unit–variable-number tandem-repeat (MIRU-VNTR) typing, and spoligotyping.

Publisher

American Society for Microbiology

Subject

Microbiology (medical)

Link

https://journals.asm.org/doi/pdf/10.1128/JCM.01573-20

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