Complete genome sequences of <i>Clostridioides difficile</i> surveillance isolates representing the top 10 ribotypes from the Emerging Infections Program, United States, 2016-Reference-Cited by-同舟云学术

Complete genome sequences of Clostridioides difficile surveillance isolates representing the top 10 ribotypes from the Emerging Infections Program, United States, 2016

Published:2024-07-18 Issue:7 Volume:13 Page:
ISSN:2576-098X
Container-title:Microbiology Resource Announcements
language:en
Short-container-title:Microbiol Resour Announc

Author:

Adamczyk Michelle¹^ORCID,Vlachos Nicholas¹^ORCID,Breaker Erin¹^ORCID,Orazi Giulia¹^ORCID,Paulick Ashley L.¹^ORCID,Rowe Lori A.²^ORCID,McAllister Gillian¹^ORCID,Machado María-José¹^ORCID,Korhonen Lauren¹^ORCID,Guh Alice Y.¹^ORCID,Rasheed J. Kamile¹^ORCID,Karlsson Maria¹³^ORCID,McKay Susannah L.¹^ORCID,Lutgring Joseph D.¹^ORCID,Gargis Amy S.¹^ORCID,

Affiliation:

1. Division of Healthcare Quality Promotion, National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA

2. Biotechnology Core Facility Branch, Division of Scientific Resources, Centers for Disease Control and Prevention, Atlanta, Georgia, USA

3. Goldbelt C6, LLC, Chesapeake, Virginia, USA

Abstract

ABSTRACT Ten Clostridioides difficile isolates representing the top 10 ribotypes collected in 2016 through the Emerging Infections Program underwent long-read sequencing to obtain high-quality reference genome assemblies. These isolates are publicly available through the CDC & FDA Antibiotic Resistance Isolate Bank.

Publisher

American Society for Microbiology

Link

https://journals.asm.org/doi/pdf/10.1128/mra.01128-23

Reference9 articles.

1. Characterization of Clostridioides difficile Isolates Available through the CDC & FDA Antibiotic Resistance Isolate Bank

2. Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

3. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

4. Basic local alignment search tool

5. Database resources of the national center for biotechnology information