Terabase-Scale Coassembly of a Tropical Soil Microbiome-Reference-Cited by-同舟云学术

Terabase-Scale Coassembly of a Tropical Soil Microbiome

Published:2023-08-17 Issue:4 Volume:11 Page:
ISSN:2165-0497
Container-title:Microbiology Spectrum
language:en
Short-container-title:Microbiol Spectr

Author:

Riley Robert¹^ORCID,Bowers Robert M.¹,Camargo Antonio Pedro¹,Campbell Ashley²,Egan Rob¹,Eloe-Fadrosh Emiley A.¹^ORCID,Foster Brian¹,Hofmeyr Steven³,Huntemann Marcel¹,Kellom Matthew¹,Kimbrel Jeffrey A.²,Oliker Leonid³,Yelick Katherine³⁴,Pett-Ridge Jennifer²⁵^ORCID,Salamov Asaf¹,Varghese Neha J.¹,Clum Alicia¹^ORCID

Affiliation:

1. Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley California, USA

2. Physical and Life Sciences Directorate, Lawrence Livermore National Laboratory, Livermore, California, USA

3. Applied Math and Computational Research Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA

4. Department of Electrical Engineering and Computer Sciences, University of California, Berkeley, California, USA

5. Life & Environmental Sciences Department, University of California Merced, Merced, California, USA

Abstract

Petabases of reads are being produced by environmental metagenome sequencing. An essential step in analyzing these data is metagenome assembly, the computational reconstruction of genome sequences from microbial communities. “Coassembly” of metagenomic sequence data, in which multiple samples are assembled together, enables more complete detection of microbial genomes in an environment than “multiassembly,” in which samples are assembled individually.

Funder

U.S. Department of Energy

Publisher

American Society for Microbiology

Subject

Infectious Diseases,Cell Biology,Microbiology (medical),Genetics,General Immunology and Microbiology,Ecology,Physiology

Link

https://journals.asm.org/doi/pdf/10.1128/spectrum.00200-23

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