Consistency of Mycobacterium tuberculosis Complex Spoligotyping between the Membrane-Based Method and <i>In Silico</i> Approach-Reference-Cited by-同舟云学术

Consistency of Mycobacterium tuberculosis Complex Spoligotyping between the Membrane-Based Method and In Silico Approach

Published:2022-06-29 Issue:3 Volume:10 Page:
ISSN:2165-0497
Container-title:Microbiology Spectrum
language:en
Short-container-title:Microbiol Spectr

Author:

Genestet Charlotte¹²,Hodille Elisabeth¹²^ORCID,Bernard Albin¹,Vallée Maxime²,Lina Gérard¹²^ORCID,Le Meur Adrien³,Refrégier Guislaine³,Dumitrescua Oana¹

Affiliation:

1. Centre International de Recherche en Infectiologie (CIRI), Ecole Normale Supérieure de Lyon, Université Claude Bernard Lyon-1, Inserm, Lyon, France

2. Hospices Civils de Lyon, Institut des Agents Infectieux, Laboratoire de Bactériologie, Lyon, France

3. Centre national de la recherche scientifique (CNRS), AgroParisTech, Ecologie Systématique et Evolution, Université Paris-Saclay, Gif-sur-Yvette, France

Abstract

Whole-genome sequencing (WGS) has profoundly transformed the perspectives of tuberculosis (TB) diagnosis, providing a better discriminatory power to determine relatedness between Mycobacterium tuberculosis complex (MTBC) isolates. Previous genotyping approaches, such as spoligotyping consisting of an initial PCR step followed by reverse dot hybridization, are currently being replaced by WGS.

Publisher

American Society for Microbiology

Subject

Infectious Diseases,Cell Biology,Microbiology (medical),Genetics,General Immunology and Microbiology,Ecology,Physiology

Link

https://journals.asm.org/doi/pdf/10.1128/spectrum.00223-22

Reference31 articles.

1. Routine survey of Mycobacterium tuberculosis isolates reveals nosocomial transmission

2. Prospective Whole-Genome Sequencing in Tuberculosis Outbreak Investigation, France, 2017–2018

3. Combined Genotypic, Phylogenetic, and Epidemiologic Analyses of Mycobacterium tuberculosis Genetic Diversity in the Rhône Alpes Region, France

4. Evaluation of the new advanced 15-loci MIRU-VNTR genotyping tool in Mycobacterium tuberculosis molecular epidemiology studies

5. Evaluation of spoligotyping, SNPs and customised MIRU-VNTR combination for genotyping Mycobacterium tuberculosis clinical isolates in Madagascar

Cited by 8 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Optimization of Mycobacterium tuberculosis DNA processing prior to whole genome sequencing;Tuberculosis;2024-09

2. Rapid resistance detection is reliable for prompt adaptation of isoniazid resistant tuberculosis management;Heliyon;2024-05

3. GenoMycAnalyzer: a web-based tool for species and drug resistance prediction for Mycobacterium genomes;BMC Genomics;2024-04-20

4. Single-tube protocol for culture-independent spoligotyping of Mycobacterium tuberculosis based on MeltArray;Journal of Clinical Microbiology;2024-01-17

5. Rapid resistance detection is reliable for prompt adaptation of isoniazid resistant tuberculosis management;2023-12-17