A New Lineage of Cryptococcus gattii (VGV) Discovered in the Central Zambezian Miombo Woodlands

Author:

Farrer Rhys A.1234ORCID,Chang Miwha5,Davis Michael J.5,van Dorp Lucy3,Yang Dong-Hoon5,Shea Terrance4,Sewell Thomas R.6ORCID,Meyer Wieland78ORCID,Balloux Francois3,Edwards Hannah M.6,Chanda Duncan9,Kwenda Geoffrey10,Vanhove Mathieu6,Chang Yun C.5,Cuomo Christina A.4ORCID,Fisher Matthew C.6ORCID,Kwon-Chung Kyung J.5

Affiliation:

1. Medical Research Council Centre for Medical Mycology, University of Exeter, Exeter, United Kingdom

2. Medical Research Council Centre for Medical Mycology, University of Aberdeen, Aberdeen, United Kingdom

3. UCL Genetics Institute, University College London, London, United Kingdom

4. Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA

5. Molecular Microbiology Section, Laboratory of Clinical Immunology and Microbiology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA

6. MRC Centre for Global Infectious Disease Analysis, Imperial College London, London, United Kingdom

7. Molecular Mycology Research Laboratory, Centre for Infectious Diseases and Microbiology, Faculty of Medicine and Health, Sydney Medical School, Westmead Clinical School, Marie Bashir Institute for Infectious Diseases and Biosecurity, The University of Sydney, Sydney, NSW, Australia

8. Westmead Hospital (Research and Education Network), Westmead Institute for Medical Research, Sydney, NSW, Australia

9. Adult Centre of Excellence, University Teaching Hospital, Lusaka, Zambia

10. Department of Biomedical Sciences, School of Health Sciences, University of Zambia, Lusaka, Zambia

Abstract

Cryptococcus gattii is an environmental pathogen that causes severe systemic infection in immunocompetent individuals more often than in immunocompromised humans. Over the past 2 decades, researchers have shown that C. gattii falls within four genetically distinct major lineages. By combining field work from an understudied ecological region (the Central Miombo Woodlands of Zambia, Africa), genome sequencing and assemblies, phylogenetic and population genetic analyses, and phenotypic characterization (morphology, histopathological, drug-sensitivity, survival experiments), we discovered a hitherto unknown lineage, which we name VGV (variety gattii five). The discovery of a new lineage from an understudied ecological region has far-reaching implications for the study and understanding of fungal pathogens and diseases they cause.

Funder

HHS | NIH | National Institute of Allergy and Infectious Diseases

NERC Environmental Bioinformatics Centre

Newton Fund

UK Research and Innovation | Medical Research Council

Publisher

American Society for Microbiology

Subject

Virology,Microbiology

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