Interlaboratory comparison of Pseudomonas aeruginosa phage susceptibility testing

Author:

Parmar Krupa1ORCID,Komarow Lauren2,Ellison Damon W.3,Filippov Andrey A.3ORCID,Nikolich Mikeljon P.3ORCID,Fackler Joseph R.4,Lee Martin4ORCID,Nair Anjna4,Agrawal Priyesh4,Tamma Pranita D.5ORCID,Souli Maria6ORCID,Evans Scott R.27,Greenwood-Quaintance Kerryl E.1ORCID,Cunningham Scott A.1ORCID,Patel Robin18ORCID,

Affiliation:

1. Division of Clinical Microbiology, Department of Laboratory Medicine and Pathology, Mayo Clinic , Rochester, Minnesota, USA

2. Biostatistics Center, George Washington University , Rockville, Maryland, USA

3. Wound Infections Department, Bacterial Diseases Branch, Walter Reed Army Institute of Research , Silver Spring, Maryland, USA

4. Adaptive Phage Therapeutics Inc. , Gaithersburg, Maryland, USA

5. Division of Pediatric Infectious Diseases, Department of Pediatrics, Johns Hopkins University School of Medicine , Baltimore, Maryland, USA

6. Duke Clinical Research Institute , Durham, North Carolina, USA

7. Department of Biostatistics and Bioinformatics, Milken Institute School of Public Health, George Washington University , Washington, D.C., USA

8. Division of Public Health, Infectious Diseases, and Occupational Medicine, Department of Medicine, Mayo Clinic , Rochester, Minnesota, USA

Abstract

ABSTRACT Standardized approaches to phage susceptibility testing (PST) are essential to inform selection of phages for study in patients with bacterial infections. There is no reference standard for assessing bacterial susceptibility to phage. We compared agreement between PST performed at three centers: two centers using a liquid assay standardized between the sites with the third, a plaque assay. Four Pseudomonas aeruginosa phages: PaWRA01ø11 (EPa11), PaWRA01ø39 (EPa39), PaWRA02ø83 (EPa83), PaWRA02ø87 (EPa87), and a cocktail of all four phages were tested against 145 P . aeruginosa isolates. Comparisons were made within measurements at the two sites performing the liquid assay and between these two sites. Agreement was assessed based on coverage probability (CP 8 ), total deviation index, concordance correlation coefficient (CCC), measurement accuracy, and precision. For the liquid assay, there was satisfactory agreement among triplicate measurements made on different days at site 1, and high agreement based on accuracy and precision between duplicate measurements made on the same run at site 2. There was fair accuracy between measurements of the two sites performing the liquid assay, with CCCs below 0.6 for all phages tested. When compared to the plaque assay (performed once at site 3), there was less agreement between results of the liquid and plaque assays than between the two sites performing the liquid assay. Similar findings to the larger group were noted in the subset of 46 P . aeruginosa isolates from cystic fibrosis. Results of this study suggest that reproducibility of PST methods needs further development.

Funder

HHS | NIH | NIAID | Division of Intramural Research, National Institute of Allergy and Infectious Diseases

Peer Reviewed Medical Research Program

Publisher

American Society for Microbiology

Subject

Microbiology (medical)

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