octoFLU: Automated Classification for the Evolutionary Origin of Influenza A Virus Gene Sequences Detected in U.S. Swine-Reference-Cited by-同舟云学术

octoFLU: Automated Classification for the Evolutionary Origin of Influenza A Virus Gene Sequences Detected in U.S. Swine

Published:2019-08-08 Issue:32 Volume:8 Page:
ISSN:2576-098X
Container-title:Microbiology Resource Announcements
language:en
Short-container-title:Microbiol Resour Announc

Author:

Chang Jennifer¹^ORCID,Anderson Tavis K.¹^ORCID,Zeller Michael A.¹²³,Gauger Phillip C.²^ORCID,Vincent Amy L.¹^ORCID

Affiliation:

1. Virus and Prion Research Unit, National Animal Disease Center, USDA-ARS, Ames, Iowa, USA

2. Department of Veterinary Diagnostic and Production Animal Medicine, College of Veterinary Medicine, Iowa State University, Ames, Iowa, USA

3. Bioinformatics and Computational Biology Program, Iowa State University, Ames, Iowa, USA

Abstract

The diversity of the 8 genes of influenza A viruses (IAV) in swine reflects introductions from nonswine hosts and subsequent antigenic drift and shift. Here, we curated a data set and present a pipeline that assigns evolutionary lineage and genetic clade to query gene segments.

Funder

HHS | NIH | National Institute of Allergy and Infectious Diseases

Oak Ridge Associated Universities

USDA | Agricultural Research Service

Publisher

American Society for Microbiology

Subject

Genetics,Immunology and Microbiology (miscellaneous),Molecular Biology

Link

https://journals.asm.org/doi/pdf/10.1128/MRA.00673-19

Reference20 articles.

1. SWINE INFLUENZA