From compost to culver: genome sequence and annotation of a cluster CQ1 <i>Gordonia</i> phage-Reference-Cited by-同舟云学术

From compost to culver: genome sequence and annotation of a cluster CQ1 Gordonia phage

Published:2023-12-22 Issue: Volume: Page:
ISSN:2576-098X
Container-title:Microbiology Resource Announcements
language:en
Short-container-title:Microbiol Resour Announc

Author:

Alexander William K.¹,Allen Rianna R.¹,Anderson Jaden D.¹,Brumfield Amber N.¹,Cook Tiffany M.¹,Dana Giana M.¹,Ethridge Gregory J.¹,Gailey Emily C.¹,Netzley Rebekah A.¹,Nguyen Joshua V.¹,Souza Phillip J.¹,Yoder Briggs M.¹,Wallen Jamie R.²,Gainey Maria D.²^ORCID,Bates Tonya C.¹,Wisner Ellen M.¹^ORCID

Affiliation:

1. Department of Biological Sciences, University of North Carolina at Charlotte, Charlotte, North Carolina, USA

2. Department of Chemistry and Physics, Western Carolina University, Cullowhee, North Carolina, USA

Abstract

ABSTRACT Phage Culver, with a siphovirus morphology, was isolated using Gordonia terrae CAG3. Culver is assigned to phage cluster CQ1 based on gene content similarity to actinobacteriophages. Notably, Culver is predicted to encode eight tRNAs, lysin A by two adjacent genes, and, unlike other CQ1 phages, two putative integrase genes.

Funder

Howard Hughes Medical Institute

UNC | University of North Carolina at Charlotte

Publisher

American Society for Microbiology

Subject

Genetics,Immunology and Microbiology (miscellaneous),Molecular Biology

Link

https://journals.asm.org/doi/pdf/10.1128/mra.01066-23

Reference19 articles.

1. A century of phage research: Bacteriophages and the shaping of modern biology

2. Bacteriophage research – What we have learnt and what still needs to be addressed

3. Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity

4. Poxleitner M Pope W Jacobs-Sera D Sivanathan V Hatfull GF. 2018. HHMI SEA-PHAGES phage discovery guide. Available from: https://seaphagesphagediscoveryguide.helpdocsonline.com/home

5. Assembly algorithms for next-generation sequencing data