1. Nuffield Department of Clinical Medicine, John Radcliffe Hospital, Oxford University, Oxford, United Kingdom
2. National Institute for Health Research (NIHR) Oxford Biomedical Research Centre, John Radcliffe Hospital, Oxford, United Kingdom
3. Department of Microbiology, Leeds Teaching Hospitals Trust, Leeds, United Kingdom
4. Healthcare Associated Infections Research Group, The Leeds Institute of Medical Research, University of Leeds, Leeds, United Kingdom
5. School of Life Sciences and Department of Statistics, University of Warwick, Coventry, United Kingdom
6. Big Data Institute, Nuffield Department of Population Health, Oxford University of Oxford, Oxford, United Kingdom
7. Department of Biology, University of Oxford, Oxford, United Kingdom