Amplicons, Metagenomes, and Metatranscriptomes from Sediment and Water
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Published:2023-04-18
Issue:4
Volume:12
Page:
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ISSN:2576-098X
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Container-title:Microbiology Resource Announcements
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language:en
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Short-container-title:Microbiol Resour Announc
Author:
Newman Madison R.1,
Sanchez Darlenys1,
Acosta Anna M.1,
Connors Bernadette J.1ORCID
Affiliation:
1. Science Department, Dominican University New York, Orangeburg, New York, USA
Abstract
High fecal indicator bacterium (FIB) counts in water have been found to correlate with high sediment FIB counts. To determine the other bacterial populations in common between the two substrates, sediment and water samples from suburban waters known to be impacted by stormwater runoff were examined using next-generation sequencing.
Funder
National Science Foundation
Publisher
American Society for Microbiology
Subject
Genetics,Immunology and Microbiology (miscellaneous),Molecular Biology
Reference15 articles.
1. Riverkeeper Bronx River Alliance Quassaick Creek Watershed Alliance Sarah Lawrence College Center for the Urban River at Beczak. 2022. Riverkeeper Hudson River tributary community science fecal indicator bacteria dataset (v2). HydroShare. http://www.hydroshare.org/resource/e22138bd77914201af48fce5bfc458f4.
2. Andrews S. 2010. FastQC: a quality control tool for high throughput sequence data.
3. fastp: an ultra-fast all-in-one FASTQ preprocessor
4. Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3
5. Huttenhower Lab. 2016. KneadData (version 0.5.4). Harvard T. H. Chan School of Public Health. http://huttenhower.sph.harvard.edu/kneaddata.