Draft Genome Sequence and Annotation of the Lichen-Forming Fungus Arthonia radiata-Reference-Cited by-同舟云学术

Draft Genome Sequence and Annotation of the Lichen-Forming Fungus Arthonia radiata

Published:2018-04-05 Issue:14 Volume:6 Page:
ISSN:2169-8287
Container-title:Genome Announcements
language:en
Short-container-title:Genome Announc

Author:

Armstrong Ellie E.¹,Prost Stefan¹²,Ertz Damien³⁴,Westberg Martin⁵,Frisch Andreas⁶,Bendiksby Mika⁶

Affiliation:

1. Department of Biology, Stanford University, Stanford, California, USA

2. Department of Integrative Biology, University of California, Berkeley, California, USA

3. Department of Research, Botanic Garden Meise, Meise, Belgium

4. Fédération Wallonie-Bruxelles, Direction Générale de l’Enseignement non Obligatoire et de la Recherche Scientifique, Brussels, Belgium

5. Museum of Evolution, Uppsala University, Uppsala, Sweden

6. NTNU University Museum, Norwegian University of Science and Technology, Trondheim, Norway

Abstract

ABSTRACT We report here the draft de novo genome assembly, transcriptome assembly, and annotation of the lichen-forming fungus Arthonia radiata (Pers.) Ach., the type species for Arthoniomycetes, a class of lichen-forming, lichenicolous, and saprobic Ascomycota. The genome was assembled using overlapping paired-end and mate pair libraries and sequenced on an Illumina HiSeq 2500 instrument.

Publisher

American Society for Microbiology

Subject

Genetics,Molecular Biology

Link

https://journals.asm.org/doi/pdf/10.1128/genomeA.00281-18

Reference12 articles.

1. Coppins BJ, Aptroot A. 2009. Arthonia Ach. (1806), p 153–171. In Smith CW, Aptroot A, Coppins BJ, Fletcher A, Gilbert OL, James PW, Wolseley PA (eds), The lichens of Great Britain and Ireland. British Lichen Society, London, United Kingdom.

2. The phylogeny of Arthoniales (Pezizomycotina) inferred from nucLSU and RPB2 sequences

3. A large-scale phylogenetic revision of Roccellaceae (Arthoniales) reveals eight new genera

4. The Arthonialean challenge: Restructuring Arthoniaceae

5. High-quality draft assemblies of mammalian genomes from massively parallel sequence data

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