Deep Sequencing Reveals a Divergent Ugandan cassava brown streak virus Isolate from Malawi-Reference-Cited by-同舟云学术

Deep Sequencing Reveals a Divergent Ugandan cassava brown streak virus Isolate from Malawi

Published:2017-08-17 Issue:33 Volume:5 Page:
ISSN:2169-8287
Container-title:Genome Announcements
language:en
Short-container-title:Genome Announc

Author:

Mbewe Willard¹²,Winter Stephan³,Mukasa Settumba²,Tairo Fred⁴,Sseruwagi Peter⁴,Ndunguru Joseph⁴,Duffy Siobain¹

Affiliation:

1. Department of Ecology, Evolution and Natural Resources, Rutgers University, New Brunswick, New Jersey, USA

2. School of Agricultural Science, Makerere University, Kampala, Uganda

3. DSMZ Plant Virus Department, Leibniz Institute, Braunschweig, Germany

4. Mikocheni Agricultural Research Institute, Dar es Salaam, Tanzania

Abstract

ABSTRACT Illumina sequencing of RNA from a cassava cutting from northern Malawi produced a genome of Ugandan cassava brown streak virus (UCBSV-MW-NB7_2013). Sequence comparisons revealed stronger similarity to an isolate from nearby Tanzania (93.4% pairwise nucleotide identity) than to those previously reported from Malawi (86.9 to 87.0%).

Funder

Department for International Development

Bill and Melinda Gates Foundation

Publisher

American Society for Microbiology

Subject

Genetics,Molecular Biology

Link

https://journals.asm.org/doi/pdf/10.1128/genomeA.00818-17

Reference6 articles.

1. Genetically distinct strains of Cassava brown streak virus in the Lake Victoria basin and the Indian Ocean coastal area of East Africa

2. Analysis of cassava brown streak viruses reveals the presence of distinct virus species causing cassava brown streak disease in East Africa

3. The Symptom and Genetic Diversity of Cassava Brown Streak Viruses Infecting Cassava in East Africa

4. Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

5. MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

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