Complete Genome Sequence of Southern tomato virus Identified in China Using Next-Generation Sequencing-Reference-Cited by-同舟云学术

Complete Genome Sequence of Southern tomato virus Identified in China Using Next-Generation Sequencing

Published:2015-10-29 Issue:5 Volume:3 Page:
ISSN:2169-8287
Container-title:Genome Announcements
language:en
Short-container-title:Genome Announc

Author:

Padmanabhan Chellappan¹,Zheng Yi²,Li Rugang¹,Sun Shu-E³,Zhang Deyong³,Liu Yong³,Fei Zhangjun²⁴,Ling Kai-Shu¹

Affiliation:

1. USDA-Agricultural Research Service, U.S. Vegetable Laboratory, Charleston, South Carolina, USA

2. Boyce Thompson Institute for Plant Research, Cornell University, Ithaca, New York, USA

3. Hunan Plant Protection Institute, Hunan Academy of Agricultural Sciences, Changsha, Hunan, China

4. USDA-Agricultural Research Service, Robert W. Holley Center for Agriculture and Health, Ithaca, New York, USA

Abstract

ABSTRACT The complete genome sequence of Southern tomato virus (STV), a double-stranded RNA virus that affects tomato in China, was determined using small RNA deep sequencing. This Chinese isolate shares 99% sequence identity to other isolates from Mexico, France, Spain, and the United States. This is the first report of STV infecting tomatoes in Asia.

Publisher

American Society for Microbiology

Subject

Genetics,Molecular Biology

Link

https://journals.asm.org/doi/pdf/10.1128/genomeA.01226-15

Reference6 articles.

1. Southern tomato virus: The link between the families Totiviridae and Partitiviridae

2. First Report of Southern tomato virus on Tomatoes in Southwest France

3. Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: A generic method for diagnosis, discovery and sequencing of viruses

4. A cost-effective method for Illumina small RNA-Seq library preparation using T4 RNA ligase 1 adenylated adapters

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