Draft Genome Sequence of a Multidrug-Resistant New Zealand Isolate of Mycobacterium tuberculosis Lineage 3-Reference-Cited by-同舟云学术

Draft Genome Sequence of a Multidrug-Resistant New Zealand Isolate of Mycobacterium tuberculosis Lineage 3

Published:2014-10-30 Issue:5 Volume:2 Page:
ISSN:2169-8287
Container-title:Genome Announcements
language:en
Short-container-title:Genome Announc

Author:

Mac Aogáin Micheál¹,Johari Bushra M.¹,Bower James E.²,O'Toole Ronan F.³

Affiliation:

1. Department of Clinical Microbiology, School of Medicine, Trinity College Dublin, St. James's Hospital, Dublin, Ireland

2. LabPlus, Auckland City Hospital, Auckland, New Zealand

3. Breathe Well Centre of Research Excellence, School of Medicine, University of Tasmania, Hobart, Tasmania, Australia

Abstract

ABSTRACT Multidrug resistance constitutes a threat worldwide to the management of tuberculosis (TB). We report the draft whole-genome sequence of a lineage 3 (East-African Indian) isolate of Mycobacterium tuberculosis which presented as multidrug resistant in New Zealand, and describe a number of single-nucleotide polymorphisms in genes relating to drug resistance.

Publisher

American Society for Microbiology

Subject

Genetics,Molecular Biology

Link

https://journals.asm.org/doi/pdf/10.1128/genomeA.01017-14

Reference7 articles.

1. WHO . 2013. Global tuberculosis Report 2013. World Health Organization, Geneva, Switzerland.

2. Phylogenetic lineages of tuberculosis isolates in New Zealand and their association with patient demographics

3. Fast and accurate long-read alignment with Burrows–Wheeler transform

4. The Sequence Alignment/Map format and SAMtools

5. A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

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1. Draft Genome Sequence of the First Confirmed Isolate of Multidrug-Resistant Mycobacterium tuberculosis in Tasmania;Genome Announcements;2017-11-02

2. Draft Genome Sequence of a Drug-Susceptible New Zealand Isolate of Mycobacterium tuberculosis Lineage 3;Genome Announcements;2015-06-25