Interstrain Variation in the Human Cytomegalovirus DNA Polymerase Sequence and Its Effect on Genotypic Diagnosis of Antiviral Drug Resistance

Author:

Chou Sunwen1,Lurain Nell S.2,Weinberg Adriana3,Cai Guang-Yung3,Sharma Prem L.4,Crumpacker Clyde S.4,

Affiliation:

1. VA Medical Center, Portland, Oregon1;

2. Rush Medical Center, Chicago, Illinois2;

3. University of Colorado Health Sciences Center, Denver, Colorado3; and

4. Beth-Israel Deaconess Medical Center, Boston, Massachusetts4

Abstract

ABSTRACT The polymerase ( pol ) coding sequence was determined for 40 independent clinical cytomegalovirus isolates sensitive to ganciclovir and foscarnet. Sequence alignments showed >98% interstrain homology and amino acid variation in only 4% of the 1,237 codons. Almost all variation occurred outside of conserved functional domains where resistance mutations have been identified.

Publisher

American Society for Microbiology

Subject

Infectious Diseases,Pharmacology (medical),Pharmacology

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