Whole-Genome Sequencing and <i>De Novo</i> Assembly of 67 Staphylococcus pseudintermedius Strains Isolated from the Skin of Healthy Dogs-Reference-Cited by-同舟云学术

Whole-Genome Sequencing and De Novo Assembly of 67 Staphylococcus pseudintermedius Strains Isolated from the Skin of Healthy Dogs

Published:2022-03-17 Issue:3 Volume:11 Page:
ISSN:2576-098X
Container-title:Microbiology Resource Announcements
language:en
Short-container-title:Microbiol Resour Announc

Author:

Fàbregas Norma¹^ORCID,Pérez Daniel²^ORCID,Viñes Joaquim¹^ORCID,Fonticoba Rocío²,Cuscó Anna¹^ORCID,Migura-García Lourdes³^ORCID,Ferrer Lluís²^ORCID,Francino Olga⁴^ORCID

Affiliation:

1. Vetgenomics, Edifici EUREKA, PRUAB, Campus UAB, Barcelona, Spain

2. Department of Animal Medicine and Surgery, Universitat Autònoma de Barcelona, Barcelona, Spain

3. IRTA, Centre de Recerca en Sanitat Animal (CReSA, IRTA-UAB), Barcelona, Spain

4. SVGM, Molecular Genetics Veterinary Service, Universitat Autònoma de Barcelona, Barcelona, Spain

Abstract

We have de novo assembled 67 Staphylococcus pseudintermedius genomes, with median values of 2.6 Mbp size and 99.43% completeness, 2,386 coding sequences, 19 complete rRNAs, 59 tRNAs, and 4 noncoding RNAs. We released 51 single-contig complete genomes and 16 genomes with a circular main contig using Nanopore sequencing.

Funder

Ministerio de Ciencia, Innovación y Universidades

Government of Catalonia | Agència de Gestió d'Ajuts Universitaris i de Recerca

Publisher

American Society for Microbiology

Subject

Genetics,Immunology and Microbiology (miscellaneous),Molecular Biology

Link

https://journals.asm.org/doi/pdf/10.1128/mra.00039-22

Reference13 articles.

1. Staphylococcus pseudintermedius in the dog: taxonomy, diagnostics, ecology, epidemiology and pathogenicity

3. Whole-Genome Sequencing and De Novo Assembly of 61 Staphylococcus pseudintermedius Isolates from Healthy Dogs and Dogs with Pyoderma

4. Performance of neural network basecalling tools for Oxford Nanopore sequencing

5. NanoPack: visualizing and processing long-read sequencing data

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3. Diverse Populations of Staphylococcus pseudintermedius Colonize the Skin of Healthy Dogs;Microbiology Spectrum;2023-04-13

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