Draft genomes of Aeromonas caviae from patients with cholera-like illness during the 2022–2023 cholera outbreak in Malawi

Author:

Jere Khuzwayo C.1234ORCID,Chibwe Innocent5,Chaima David6,Kasambala Watipaso5,Mhango Chimwemwe27,Bitilinyu-Bangoh Joseph5,Mvula Bernard5,Kipandula Wakisa3,Kamng'ona Arox W.7,Steele A. Duncan8,Chauma-Mwale Annie5,Hungerford Daniel14,Kagoli Matthew5,Nyaga Martin M.9,Dube Queen10,French Neil16,Cunliffe Nigel A.14,Msefula Chisomo L.46,Chaguza Chrispin11121314ORCID

Affiliation:

1. Department of Clinical Infection, Microbiology and Immunology, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, United Kingdom

2. Malawi-Liverpool-Wellcome Research Programme, Kamuzu University of Health Sciences, Blantyre, Malawi

3. Department of Medical Laboratory Sciences, Faculty of Biomedical Sciences and Health Profession, Kamuzu University of Health Sciences, Blantyre, Malawi

4. NIHR Global Health Research Group on Gastrointestinal Infections, University of Liverpool, Liverpool, Merseyside, United Kingdom

5. National Microbiology Reference Laboratory, Public Health Institute of Malawi, Lilongwe, Malawi

6. Department of Pathology, School of Medicine and Oral Health, Kamuzu University of Health Sciences, Blantyre, Malawi

7. Department of Biomedical Sciences, School of Life Sciences and Allied Health Professions, Kamuzu University of Health Sciences, Blantyre, Malawi

8. Diarrhoeal Pathogens Research Unit, Sefako Makgatho Health Sciences University, Medunsa, Pretoria, South Africa

9. Next Generation Sequencing Unit and Division of Virology, Faculty of Health Sciences, University of the Free State, Bloemfontein, Free State, South Africa

10. Malawi Ministry of Health, Lilongwe, Malawi

11. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, YaleUniversity, New Haven, Connecticut, USA

12. Yale Institute for Global Health, Yale University, New Haven, Connecticut, USA

13. NIHR Mucosal Pathogens Research Unit, Research Department of Infection, Division of Infection and Immunity, University College London, London, United Kingdom

14. Parasites and Microbes Programme, Wellcome Sanger Institute, Hinxton, United Kingdom

Abstract

ABSTRACT Aeromonas caviae is an increasingly recognized etiological agent of acute gastroenteritis. Here, we report five draft genomes of A. caviae isolated from suspected cholera cases during the 2022–2023 cholera outbreak in Malawi.

Funder

National Institute of Health and Care Research (NIHR) Global Health Research Group on Gastrointestinal Pathogens

Bill and Melinda Gates Foundation

Publisher

American Society for Microbiology

Subject

Genetics,Immunology and Microbiology (miscellaneous),Molecular Biology

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