1. National Institute for Communicable Diseases, Centre for Healthcare-Associated Infections, Antimicrobial Resistance, and Mycoses, National Health Laboratory Service, Johannesburg, South Africa
2. School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa
3. National Institute for Communicable Diseases, Sequencing Core Facility, National Health Laboratory Service, Johannesburg, South Africa
4. Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA
5. National Health Laboratory Service, Chris Hani Baragwaneth Academic Hospital, Soweto, South Africa
6. National Health Laboratory Service, Charlotte Maxeke Johannesburg Academic Hospital, Johannesburg, South Africa
7. AMPATH National Laboratory Service, Centurion, South Africa
8. Lancet Laboratories, Durban, South Africa
9. Division of Medical Microbiology, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa