Genome Sequence of the Attenuated Equid Alphaherpesvirus 1 Strain AK-2011, Isolated in Kazakhstan

Author:

Karamendin Kobey12ORCID,Abishov Abdikalyk3,Kydyrmanov Aidyn12,Akhmetzhanova Moldir4

Affiliation:

1. Laboratory of Viral Ecology, Scientific Production Center of Microbiology and Virology, LLP, Almaty, Kazakhstan

2. Kazakh National Agrarian Research University, Almaty, Kazakhstan

3. Virology Laboratory, SPE DiaVak-ABN, LLP, Almaty, Kazakhstan

4. Virology Laboratory, Antigen, LLP, Almaty, Kazakhstan

Abstract

In 2011, there was an outbreak of a disease with mass abortions among horses in southeastern Kazakhstan. The AK-2011 strain was isolated from an aborted fetus and subsequently identified as equid alphaherpesvirus 1. Here, we describe the nearly complete genome sequence of the AK-2011 strain, attenuated for vaccine development.

Funder

Ministry of Agriculture ot the Republic of Kazakhstan

Publisher

American Society for Microbiology

Subject

Genetics,Immunology and Microbiology (miscellaneous),Molecular Biology

Reference9 articles.

1. World Organization of Animal Health. 2022. Chapter 12.8. Infection with equid herpesvirus-1 (equine rhinopneumonitis). In Terrestrial animal health code. World Organization of Animal Health, Paris, France. https://www.woah.org/fileadmin/Home/eng/Health_standards/tahc/current/chapitre_equine_rhinopneumonitis.pdf.

2. AK‐2011 strain for the development of a vaccine against equine rhinopneumonitis

3. Andrews S. 2010. FastQC: a quality control tool for high throughput sequence data. https://www.bioinformatics.babraham.ac.uk/projects/fastqc.

4. Using SPAdes De Novo Assembler

5. Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

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