Draft Genome Sequence of Herpotrichiellaceae sp. UM 238 Isolated from Human Skin Scraping-Reference-Cited by-同舟云学术

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Draft Genome Sequence of Herpotrichiellaceae sp. UM 238 Isolated from Human Skin Scraping

Published:2013-02-28 Issue:1 Volume:1 Page:
ISSN:2169-8287
Container-title:Genome Announcements
language:en
Short-container-title:Genome Announc

Author:

Ng Kee Peng¹,Yew Su Mei¹,Chan Chai Ling¹,Tan Ruixin¹,Soo-Hoo Tuck Soon¹,Na Shiang Ling¹,Hassan Hamimah¹,Ngeow Yun Fong¹,Hoh Chee-Choong²,Lee Kok Wei²,Yee Wai-Yan²

Affiliation:

1. Tropical Infectious Diseases Research and Education Centre (TIDREC), Department of Medical Microbiology, University Malaya Medical Centre, Faculty of Medicine, University of Malaya, Kuala Lumpur, Malaysia

2. Codon Genomics SB, Jalan Bandar Lapan Belas, Pusat Bandar Puchong, Selangor Darul Ehsan, Malaysia

Abstract

ABSTRACT Herpotrichiellaceae spp. are known to be opportunistic human pathogens. Here, we report the ~28.46-Mb draft genome of Herpotrichiellaceae sp. UM 238, isolated from human skin scraping. The UM 238 genome was found to contain many classes of protective genes that are responsible for fungal adaptation under adverse environmental conditions.

Publisher

American Society for Microbiology

Subject

Genetics,Molecular Biology

Link

https://journals.asm.org/doi/pdf/10.1128/genomeA.00148-12

Reference17 articles.

1. Phaeohyphomycosis

2. Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

3. Scaffolding pre-assembled contigs using SSPACE

4. Toward almost closed genomes with GapFiller

5. Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training

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