Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7-Reference-Cited by-同舟云学术

Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7

Published:2016-10-27 Issue:5 Volume:4 Page:
ISSN:2169-8287
Container-title:Genome Announcements
language:en
Short-container-title:Genome Announc

Author:

Utturkar Sagar M.¹,Bayer Edward A.²,Borovok Ilya³,Lamed Raphael³,Hurt Richard A.⁴,Land Miriam L.⁴,Klingeman Dawn M.⁴⁵,Elias Dwayne⁴^ORCID,Zhou Jizhong⁶,Huntemann Marcel⁷,Clum Alicia⁷,Pillay Manoj⁷,Palaniappan Krishnaveni⁷,Varghese Neha⁷,Mikhailova Natalia⁷,Stamatis Dimitrios⁷,Reddy T. B. K.⁷,Ngan Chew Yee⁷,Daum Chris⁷,Shapiro Nicole⁷,Markowitz Victor⁷,Ivanova Natalia⁷,Kyrpides Nikos⁷,Woyke Tanja⁷,Brown Steven D.¹⁴⁵

Affiliation:

1. Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, Tennessee, USA

2. Department of Biological Chemistry, The Weizmann Institute of Science, Rehovot, Israel

3. Department of Molecular Microbiology and Biotechnology, Tel-Aviv University, Ramat Aviv, Israel

4. Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA

5. BioEnergy Science Center, Oak Ridge, Tennessee, USA

6. Institute for Environmental Genomics, University of Oklahoma, Norman, Oklahoma, USA

7. DOE Joint Genome Institute, Walnut Creek, California, USA

Abstract

ABSTRACT We and others have shown the utility of long sequence reads to improve genome assembly quality. In this study, we generated PacBio DNA sequence data to improve the assemblies of draft genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7.

Funder

DOE | SC | Biological and Environmental Research

Publisher

American Society for Microbiology

Subject

Genetics,Molecular Biology

Link

https://journals.asm.org/doi/pdf/10.1128/genomeA.01043-16

Reference17 articles.

1. Draft Genome Sequences for Clostridium thermocellum Wild-Type Strain YS and Derived Cellulose Adhesion-Defective Mutant Strain AD2

2. Sequencing of Multiple Clostridial Genomes Related to Biomass Conversion and Biofuel Production

3. Draft Genome Sequences for Two Metal-Reducing Pelosinus fermentans Strains Isolated from a Cr(VI)-Contaminated Site and for Type Strain R7

4. Thermophilic lignocellulose deconstruction

5. Adherence of Clostridium thermocellum to cellulose

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