FEDS: a Novel Fluorescence-Based High-Throughput Method for Measuring DNA Supercoiling In Vivo-Reference-Cited by-同舟云学术

FEDS: a Novel Fluorescence-Based High-Throughput Method for Measuring DNA Supercoiling In Vivo

Published:2020-08-25 Issue:4 Volume:11 Page:
ISSN:2161-2129
Container-title:mBio
language:en
Short-container-title:mBio

Author:

Duprey Alexandre¹^ORCID,Groisman Eduardo A.¹²^ORCID

Affiliation:

1. Department of Microbial Pathogenesis, Yale School of Medicine, New Haven, Connecticut, USA

2. Yale Microbial Sciences Institute, West Haven, Connecticut, USA

Abstract

DNA represents the chemical support of genetic information in all forms of life. In addition to its linear sequence of nucleotides, it bears critical information in its structure. This information, called DNA supercoiling, is central to all fundamental DNA processes, such as transcription and replication, and defines cellular physiology. Unlike reading of a nucleotide sequence, DNA supercoiling determinations have been laborious. We have now developed a method for rapid measurement of DNA supercoiling and established its utility by identifying a novel regulator of DNA supercoiling in the bacterium Salmonella enterica as well as behaviors that could not have been discovered with current methods.

Funder

HHS | NIH | National Institute of Allergy and Infectious Diseases

Publisher

American Society for Microbiology

Subject

Virology,Microbiology

Link

https://journals.asm.org/doi/pdf/10.1128/mBio.01053-20

Reference48 articles.

1. Contributions of Supercoiling to Tn3 Resolvase and Phage Mu Gin Site-specific Recombination

2. Effect of Topoisomerase Inhibitors on the in Vitro HIV DNA Integration Reaction

3. Local domains of supercoiling activate a eukaryotic promoter in vivo

4. Measuring In Vivo Supercoil Dynamics and Transcription Elongation Rates in Bacterial Chromosomes

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