Targeted Metagenomics for Clinical Detection and Discovery of Bacterial Tick-Borne Pathogens-Reference-Cited by-同舟云学术

Targeted Metagenomics for Clinical Detection and Discovery of Bacterial Tick-Borne Pathogens

Published:2020-10-21 Issue:11 Volume:58 Page:
ISSN:0095-1137
Container-title:Journal of Clinical Microbiology
language:en
Short-container-title:J Clin Microbiol

Author:

Kingry Luke¹^ORCID,Sheldon Sarah¹,Oatman Stephanie¹,Pritt Bobbi²,Anacker Melissa³,Bjork Jenna³,Neitzel David³,Strain Anna³,Berry Jon²,Sloan Lynne²,Respicio-Kingry Laurel¹,Dietrich Elizabeth¹,Bloch Karen⁴,Moncayo Abelardo⁵,Srinivasamoorthy Ganesh⁶,Hu Bin⁶,Hinckley Alison¹,Mead Paul¹,Kugeler Kiersten¹,Petersen Jeannine¹

Affiliation:

1. Division of Vector-Borne Diseases, Centers for Disease Control and Prevention, Fort Collins, Colorado, USA

2. Division of Clinical Microbiology, Mayo Clinic, Rochester, Minnesota, USA

3. Minnesota Department of Health, St. Paul, Minnesota, USA

4. Vanderbilt University Medical Center, Nashville, Tennessee, USA

5. Tennessee Department of Health, Nashville, Tennessee, USA

6. Scientific Computing and Bioinformatics Support, Centers for Disease Control and Prevention, Atlanta, Georgia, USA

Abstract

Tick-borne diseases, due to a diversity of bacterial pathogens, represent a significant and increasing public health threat throughout the Northern Hemisphere. A high-throughput 16S V1-V2 rRNA gene-based metagenomics assay was developed and evaluated using >13,000 residual samples from patients suspected of having tick-borne illness and >1,000 controls. Taxonomic predictions for tick-borne bacteria were exceptionally accurate, as independently validated by secondary testing. Overall, 881 specimens were positive for bacterial tick-borne agents.

Publisher

American Society for Microbiology

Subject

Microbiology (medical)

Link

https://journals.asm.org/doi/pdf/10.1128/JCM.00147-20

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