Metatranscriptomes of California grassland soil microbial communities in response to rewetting-Reference-Cited by-同舟云学术

Metatranscriptomes of California grassland soil microbial communities in response to rewetting

Published:2024-06-11 Issue:6 Volume:13 Page:
ISSN:2576-098X
Container-title:Microbiology Resource Announcements
language:en
Short-container-title:Microbiol Resour Announc

Author:

Chuckran Peter F.¹^ORCID,Estera-Molina Katerina¹²,Huntemann Marcel³^ORCID,Foster Brian³,Roux Simon³,Mukherjee Supratim³^ORCID,Hajek Patrick³,Reddy T. B. K.³^ORCID,Daum Chris³^ORCID,Chen I-Min A.³^ORCID,Pennacchio Christa³,Eloe-Fadrosh Emiley A.³^ORCID,Dijkstra Paul⁴,Firestone Mary K.¹^ORCID,Blazewicz Steven J.²,Pett-Ridge Jennifer²⁵⁶^ORCID

Affiliation:

1. Department of Environmental Science, Policy, and Management, University of California, Berkeley, California, USA

2. Physical and Life Sciences Directorate, Lawrence Livermore National Laboratory, Livermore, California, USA

3. Department of Energy, Joint Genome Institute, Berkeley, California, USA

4. Center for Ecosystem Science and Society (ECOSS) and Department of Biological Sciences, Northern Arizona University, Flagstaff, Arizona, USA

5. Life & Environmental Sciences Department, University of California Merced, Merced, California, USA

6. Innovative Genomics Institute, University of California Berkeley, Berkeley, Californi, USA

Abstract

ABSTRACT When very dry soil is rewet, rapid stimulation of microbial activity has important implications for ecosystem biogeochemistry, yet associated changes in microbial transcription are poorly known. Here, we present metatranscriptomes of California annual grassland soil microbial communities, collected over 1 week from soils rewet after a summer drought—providing a time series of short-term transcriptional response during rewetting.

Funder

U.S. Department of Energy

Publisher

American Society for Microbiology

Link

https://journals.asm.org/doi/pdf/10.1128/mra.00322-24

Reference8 articles.

1. The effect of soil drying on humus decomposition and nitrogen availability

2. Growth and death of bacteria and fungi underlie rainfall-induced carbon dioxide pulses from seasonally dried soil

3. Drying and wetting of Mediterranean soils stimulates decomposition and carbon dioxide emission: the "Birch effect"

4. A subset of viruses thrives following microbial resuscitation during rewetting of a seasonally dry California grassland soil

5. MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph