An Early Pandemic Analysis of SARS-CoV-2 Population Structure and Dynamics in Arizona-Reference-Cited by-同舟云学术

An Early Pandemic Analysis of SARS-CoV-2 Population Structure and Dynamics in Arizona

Published:2020-10-27 Issue:5 Volume:11 Page:
ISSN:2161-2129
Container-title:mBio
language:en
Short-container-title:mBio

Author:

Ladner Jason T.¹,Larsen Brendan B.²,Bowers Jolene R.³,Hepp Crystal M.¹⁴^ORCID,Bolyen Evan⁵,Folkerts Megan³,Sheridan Krystal¹,Pfeiffer Ashlyn³,Yaglom Hayley³,Lemmer Darrin³,Sahl Jason W.¹,Kaelin Emily A.⁶⁷,Maqsood Rabia⁷,Bokulich Nicholas A.¹⁵⁸,Quirk Grace²,Watts Thomas D.²,Komatsu Kenneth K.⁹,Waddell Victor¹⁰,Lim Efrem S.⁶⁷^ORCID,Caporaso J. Gregory⁵⁸^ORCID,Engelthaler David M.³^ORCID,Worobey Michael²,Keim Paul¹³⁸^ORCID

Affiliation:

1. Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, USA

2. Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, Arizona, USA

3. Pathogen and Microbiome Division, Translational Genomics Research Institute, Flagstaff, Arizona, USA

4. School of Informatics, Computing, and Cyber Systems, Northern Arizona University, Flagstaff, Arizona, USA

5. Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, USA

6. School of Life Sciences, Arizona State University, Tempe, Arizona, USA

7. Center for Fundamental and Applied Microbiomics, Biodesign Institute, Tempe, Arizona, USA

8. Department of Biological Sciences, Northern Arizona University, Flagstaff, Arizona, USA

9. Arizona Department of Health Services, Phoenix, Arizona, USA

10. Bureau of Laboratory Services, Arizona Department of Health Services, Phoenix, Arizona, USA

Abstract

As the COVID-19 pandemic swept across the United States, there was great differential impact on local and regional communities. One of the earliest and hardest hit regions was in New York, while at the same time Arizona (for example) had low incidence. That situation has changed dramatically, with Arizona now having the highest rate of disease increase in the country. Understanding the roots of the pandemic during the initial months is essential as the pandemic continues and reaches new heights. Genomic analysis and phylogenetic modeling of SARS-COV-2 in Arizona can help to reconstruct population composition and predict the earliest undetected introductions. This foundational work represents the basis for future analysis and understanding as the pandemic continues.

Publisher

American Society for Microbiology

Subject

Virology,Microbiology

Link

https://journals.asm.org/doi/pdf/10.1128/mBio.02107-20

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