Eleven High-Quality Reference Genome Sequences and 360 Draft Assemblies of Shiga Toxin-Producing Escherichia coli Isolates from Human, Food, Animal, and Environmental Sources in Canada-Reference-Cited by-同舟云学术

Eleven High-Quality Reference Genome Sequences and 360 Draft Assemblies of Shiga Toxin-Producing Escherichia coli Isolates from Human, Food, Animal, and Environmental Sources in Canada

Published:2019-10-10 Issue:41 Volume:8 Page:
ISSN:2576-098X
Container-title:Microbiology Resource Announcements
language:en
Short-container-title:Microbiol Resour Announc

Author:

Tyson Shari¹,Peterson Christy-Lynn¹,Olson Adam¹,Tyler Shaun¹,Knox Natalie¹²,Griffiths Emma³⁴,Dooley Damion⁴,Hsiao William⁴,Cabral Jennifer¹,Johnson Roger P.⁵,Laing Chad⁶,Gannon Victor⁶,Lynch Tarah¹,Van Domselaar Gary¹²,Brinkman Fiona³,Graham Morag¹²

Affiliation:

1. National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, Manitoba, Canada

2. Department of Medical Microbiology and Infectious Diseases, University of Manitoba, Winnipeg, Manitoba, Canada

3. Department of Molecular Biology and Biochemistry, Simon Fraser University, Vancouver, British Columbia, Canada

4. British Columbia Public Health Microbiology and Reference Laboratory, Vancouver, British Columbia, Canada

5. National Microbiology Laboratory, Public Health Agency of Canada, Guelph, Ontario, Canada

6. National Microbiology Laboratory, Public Health Agency of Canada, Lethbridge, Alberta, Canada

Abstract

We report high-quality closed reference genomes for 1 bovine strain and 10 human Shiga toxin (Stx)-producing Escherichia coli (STEC) strains from serogroups O26, O45, O91, O103, O104, O111, O113, O121, O145, and O157. We also report draft assemblies, with standardized metadata, for 360 STEC strains isolated from watersheds, animals, farms, food, and human infections.

Funder

Genome British Columbia

Government of Canada

Genome Canada

Publisher

American Society for Microbiology

Subject

Genetics,Immunology and Microbiology (miscellaneous),Molecular Biology

Link

https://journals.asm.org/doi/pdf/10.1128/MRA.00625-19

Reference36 articles.

1. Experimental infection of calves and adult cattle with Escherichia coli O157:H7