Complete Genome Sequences of SARS-CoV-2 Strains Detected in Malaysia-Reference-Cited by-同舟云学术

Complete Genome Sequences of SARS-CoV-2 Strains Detected in Malaysia

Published:2020-05-14 Issue:20 Volume:9 Page:
ISSN:2576-098X
Container-title:Microbiology Resource Announcements
language:en
Short-container-title:Microbiol Resour Announc

Author:

Chong Yoong Min¹,Sam I-Ching¹²,Ponnampalavanar Sasheela³,Syed Omar Sharifah Faridah³,Kamarulzaman Adeeba³,Munusamy Vijayan³,Wong Chee Kuan³,Jamaluddin Fadhil Hadi⁴,Gan Han Ming⁵,Chong Jennifer²,Teh Cindy Shuan Ju¹,Chan Yoke Fun¹^ORCID

Affiliation:

1. Department of Medical Microbiology, Faculty of Medicine, University of Malaya, Kuala Lumpur, Malaysia

2. Department of Medical Microbiology, University of Malaya Medical Centre, Kuala Lumpur, Malaysia

3. Department of Medicine, Faculty of Medicine, University of Malaya, Kuala Lumpur, Malaysia

4. Department of Anaesthesiology, Faculty of Medicine, University of Malaya, Kuala Lumpur, Malaysia

5. GeneSeq Sdn Bhd, Rawang, Selangor, Malaysia

Abstract

We sequenced four severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) genomes from Malaysia during the second wave of infection and found unique mutations which suggest local evolution. Circulating Malaysian strains represent introductions from different countries, particularly during the first wave of infection. Genome sequencing is important for understanding local epidemiology.

Publisher

American Society for Microbiology

Subject

Genetics,Immunology and Microbiology (miscellaneous),Molecular Biology

Link

https://journals.asm.org/doi/pdf/10.1128/MRA.00383-20

Reference4 articles.

1. Ministry of Health Malaysia. 2020. Press statement from the Director-General of Health 1 April 2020: updates on the coronavirus disease 2019 (COVID-19) situation in Malaysia. https://kpkesihatan.com/2020/04/01/kenyataan-akhbar-kpk-1-april-2020-situasi-semasa-jangkitan-penyakit-coronavirus-2019-covid-19-di-malaysia/. Accessed 23 April 2020.

2. ARTIC Network. 2020. nCoV-2019 sequencing protocol. https://www.protocols.io/view/ncov-2019-sequencing-protocol-bbmuik6w. Accessed 23 April 2020.

3. MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

4. FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

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