The Locus Coding for the 3-Nitrobenzoate Dioxygenase of Comamonas sp. Strain JS46 Is Flanked by IS 1071 Elements and Is Subject to Deletion and Inversion Events

Abstract

ABSTRACT In Comamonas sp. strain JS46, 3-nitrobenzoate (3Nba) is initially oxidized at the 3,4 position by a dioxygenase, which results in release of nitrite and production of protocatechuate. The locus coding for the 3Nba dioxygenase (designated mnb , for m-n itro b enzoate) was mobilized from strain JS46 using a plasmid capture method, cloned, and sequenced. The 3Nba dioxygenase (MnbA) is a member of the phthalate family of aromatic oxygenases. An open reading frame designated mnbB that codes for an NAD(P)H-dependent class IA aromatic oxidoreductase is downstream of mnbA . MnbB is tentatively identified as the oxidoreductase that transfers reducing equivalents to MnbA in strain JS46. The mnb locus is flanked by IS 1071 elements. The upstream element is interrupted by a novel insertion sequence designated IS Csp1 , and the transposase genes of the flanking insertion elements are transcribed in the direction opposite the direction of mnbA transcription. Spontaneous deletion of mnb occurs because of homologous recombination between the directly repeated flanking IS 1071 elements. In addition, in ∼0.007 to 0.2% of any population of JS46 cells growing on 3Nba, alternative orientations of mnb relative to the flanking IS 1071 elements are detected. These alternative forms are the result of inversions of mnb and the flanking IS 1071 elements. Inversions appear to occur because of homologous recombination between the inverted repeats that flank the IS 1071 elements.