Genome-Resolved Metaproteomics Decodes the Microbial and Viral Contributions to Coupled Carbon and Nitrogen Cycling in River Sediments-Reference-Cited by-同舟云学术

Genome-Resolved Metaproteomics Decodes the Microbial and Viral Contributions to Coupled Carbon and Nitrogen Cycling in River Sediments

Published:2022-08-30 Issue:4 Volume:7 Page:
ISSN:2379-5077
Container-title:mSystems
language:en
Short-container-title:mSystems

Author:

Rodríguez-Ramos Josué A.¹^ORCID,Borton Mikayla A.¹²^ORCID,McGivern Bridget B.¹^ORCID,Smith Garrett J.³^ORCID,Solden Lindsey M.¹^ORCID,Shaffer Michael¹^ORCID,Daly Rebecca A.¹^ORCID,Purvine Samuel O.⁴^ORCID,Nicora Carrie D.²^ORCID,Eder Elizabeth K.⁴^ORCID,Lipton Mary⁴^ORCID,Hoyt David W.⁴^ORCID,Stegen James C.²^ORCID,Wrighton Kelly C.¹^ORCID

Affiliation:

1. Department of Soil and Crop Sciences, Colorado State University, Fort Collins, Colorado, USA

2. Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, USA

3. Department of Microbiology, Radboud University, Nijmegen, Netherlands

4. Environmental and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA

Abstract

Here we created HUM-V ( h yporheic u ncultured m icrobial and v iral), an annotated microbial and viral MAG catalog that captures strain and functional diversity encoded in these Columbia River sediment samples. Demonstrating its utility, this genomic inventory encompasses multiple representatives of dominant microbial and archaeal phyla reported in other river sediments and provides novel viral MAGs that can putatively infect these.

Funder

Subsurface Biogeochemical Research (SBR) Program

National Sciences Foundation of Biological Infrastructure

National Sciences Foundation

U.S. Department of Energy

U.S. Department of Energy Office of Biological and Environmental Research, Environmental System Science

Joint Genome Institute Large-Scale Sequencing Award

Publisher

American Society for Microbiology

Subject

Computer Science Applications,Genetics,Molecular Biology,Modeling and Simulation,Ecology, Evolution, Behavior and Systematics,Biochemistry,Physiology,Microbiology

Link

https://journals.asm.org/doi/pdf/10.1128/msystems.00516-22

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