Using Cartesian Doubt To Build a Sequencing-Based View of Microbiology-Reference-Cited by-同舟云学术

Using Cartesian Doubt To Build a Sequencing-Based View of Microbiology

Published:2021-10-26 Issue:5 Volume:6 Page:
ISSN:2379-5077
Container-title:mSystems
language:en
Short-container-title:mSystems

Author:

Tierney Braden T.¹²³⁴^ORCID,Szymanski Erika⁵^ORCID,Henriksen James R.⁶^ORCID,Kostic Aleksandar D.²³⁴^ORCID,Patel Chirag J.¹^ORCID

Affiliation:

1. Department of Biomedical Informatics, Harvard Medical School, Boston, Massachusetts, USA

2. Section on Pathophysiology and Molecular Pharmacology, Joslin Diabetes Center, Boston, Massachusetts, USA

3. Section on Islet Cell and Regenerative Biology, Joslin Diabetes Center, Boston, Massachusetts, USA

4. Department of Microbiology, Harvard Medical School, Boston, Massachusetts, USA

5. Department of English, Colorado State University, Fort Collins, Colorado, USA

6. Mr. Fusion Inc., Fort Collins, Colorado, USA

Abstract

The technological leap of DNA sequencing generated a tension between modern metagenomics and historical microbiology. We are forcibly harmonizing the output of a modern tool with centuries of experimental knowledge derived from culture-based microbiology.

Publisher

American Society for Microbiology

Subject

Computer Science Applications,Genetics,Molecular Biology,Modeling and Simulation,Ecology, Evolution, Behavior and Systematics,Biochemistry,Physiology,Microbiology

Link

https://journals.asm.org/doi/pdf/10.1128/mSystems.00574-21

Reference35 articles.

1. Descartes R. 2008. Meditations on first philosophy: with selections from the objections and replies. Oxford University Press, Oxford, United Kingdom.

2. Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life

3. The genetic integrity of bacterial species: the core genome and the accessory genome, two different stories

4. Metagenomics: Application of Genomics to Uncultured Microorganisms

5. Microbial Taxonomy Run Amok

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