Spatiotemporal Heterogeneity and Intragenus Variability in Rhizobacterial Associations with Brassica rapa Growth

Author:

Klasek Scott A.12ORCID,Brock Marcus T.2,Calder W. John2,Morrison Hilary G.1,Weinig Cynthia234ORCID,Maïgnien Lois15

Affiliation:

1. Josephine Bay Paul Center, Marine Biological Laboratory, Woods Hole, Massachusetts, USA

2. Department of Botany, University of Wyoming, Laramie, Wyoming, USA

3. Program in Ecology, University of Wyoming, Laramie, Wyoming, USA

4. Department of Molecular Biology, University of Wyoming, Laramie, Wyoming, USA

5. Laboratory of Microbiology of Extreme Environments, UMR 6197, Institut Européen de la Mer, Université de Bretagne Occidentale, Plouzane, France

Abstract

The rhizosphere, the zone of soil surrounding plant roots, is a hot spot for microbial activity, hosting bacteria capable of promoting plant growth in ways like increasing nutrient availability or fighting plant pathogens. This microbial system is highly diverse and most bacteria are unculturable, so to identify specific bacteria associated with plant growth, we used culture-independent community DNA sequencing combined with machine learning techniques.

Funder

National Science Foundation

Publisher

American Society for Microbiology

Subject

Computer Science Applications,Genetics,Molecular Biology,Modeling and Simulation,Ecology, Evolution, Behavior and Systematics,Biochemistry,Physiology,Microbiology

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