A high-quality genome of an undescribed <i>Flavobacterium</i> species uncovered using Q20+ Nanopore chemistry-Reference-Cited by-同舟云学术

A high-quality genome of an undescribed Flavobacterium species uncovered using Q20+ Nanopore chemistry

Published:2024-01-17 Issue:1 Volume:13 Page:
ISSN:2576-098X
Container-title:Microbiology Resource Announcements
language:en
Short-container-title:Microbiol Resour Announc

Author:

Hofer Cyrill¹^ORCID,Wälchli Denise²,Moncadas Lucas Serra¹,Rain-Franco Angel¹^ORCID,Andrei Adrian-Stefan¹^ORCID

Affiliation:

1. Limnological Station, Department of Plant and Microbial Biology, University of Zurich , Kilchberg, Switzerland

2. Faculty of Science, University of Zurich , Zurich, Switzerland

Abstract

ABSTRACT Herein, we document the complete genome of the Flavobacterium strain ZE23DGlu08, isolated from Lake Zurich, Switzerland. The circular genome was assembled using long-read Nanopore data (coverage: 226×) with the Q20+ chemistry. The described strain displays a genome size of ~3.9 Mbp with a GC content of 34%.

Funder

Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung

Publisher

American Society for Microbiology

Subject

Genetics,Immunology and Microbiology (miscellaneous),Molecular Biology

Link

https://journals.asm.org/doi/pdf/10.1128/mra.00716-23

Reference19 articles.

1. Cutting a Gordian Knot: Emended Classification and Description of the Genus Flavobacterium, Emended Description of the Family Flavobacteriaceae, and Proposal of Flavobacterium hydatis nom. nov. (Basonym, Cytophaga aquatilis Strohl and Tait 1978)

2. Bernardet JF , Nakagawa Y . 2006. An introduction to the family Flavobacteriaceae, p 455–480. Springer New York, New York, NY.

3. The ecology of CytophagaâFlavobacteria in aquatic environments

4. Stochasticity causes high β‐diversity and functional divergence of bacterial assemblages in closed systems

5. Cryopreservation and Resuscitation of Natural Aquatic Prokaryotic Communities