Stable-Isotope-Informed, Genome-Resolved Metagenomics Uncovers Potential Cross-Kingdom Interactions in Rhizosphere Soil

Author:

Starr Evan P.1,Shi Shengjing2,Blazewicz Steven J.3,Koch Benjamin J.45,Probst Alexander J.6,Hungate Bruce A.45ORCID,Pett-Ridge Jennifer3ORCID,Firestone Mary K.78ORCID,Banfield Jillian F.7891011ORCID

Affiliation:

1. Department of Plant and Microbial Biology, University of California, Berkeley, California, USA

2. Lincoln Science Centre, AgResearch Ltd., Christchurch, New Zealand

3. Physical and Life Sciences Directorate, Lawrence Livermore National Laboratory, Livermore, California, USA

4. Department of Biological Sciences, Northern Arizona University, Flagstaff, Arizona, USA

5. Center for Ecosystem Science and Society, Northern Arizona University, Flagstaff, Arizona, USA

6. Biofilm Center, University of Duisburg—Essen, Essen, Germany

7. Department of Environmental Science, Policy, and Management, University of California, Berkeley, California, USA

8. Earth and Environmental Sciences, Lawrence Berkeley National Laboratory, Berkeley, California, USA

9. Department of Earth and Planetary Science, University of California, Berkeley, California, USA

10. Innovative Genomics Institute, Berkeley, California, USA

11. Chan Zuckerberg Biohub, San Francisco, California, USA

Abstract

Plants grow in intimate association with soil microbial communities; these microbes can facilitate the availability of essential resources to plants. Thus, plant productivity commonly depends on interactions with rhizosphere bacteria, viruses, and eukaryotes.

Funder

German Science Foundation

National Science Foundation

U.S. Department of Energy

Publisher

American Society for Microbiology

Subject

Molecular Biology,Microbiology

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