Complete Genome Sequence of Rhodococcus sp. Strain W8901, a Human Clinical Specimen, Assembled Using MiSeq and MinION Sequence Data-Reference-Cited by-同舟云学术

Complete Genome Sequence of Rhodococcus sp. Strain W8901, a Human Clinical Specimen, Assembled Using MiSeq and MinION Sequence Data

Published:2021-09-02 Issue:35 Volume:10 Page:
ISSN:2576-098X
Container-title:Microbiology Resource Announcements
language:en
Short-container-title:Microbiol Resour Announc

Author:

Gulvik Christopher A.¹,Batra Dhwani²,Howard Dakota T.²,Sheth Milli²,Humrighouse Ben W.¹,Lee Justin²,McQuiston John R.¹,Lasker Brent A.¹^ORCID

Affiliation:

1. Bacterial Special Pathogens Branch, Division of High-Consequence Pathogens and Pathology, National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA

2. Biotechnology Core Facility Branch, Division of Scientific Resources, National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA

Abstract

Rhodococcus sp. strain W8901 is a Gram-positive, aerobic, mycolic acid-containing coccobacillus obtained from a patient with acute lymphocytic leukemia. Here, we report on the complete, circular genome sequence obtained using Illumina MiSeq and Oxford Nanopore Technologies MinION reads in order to better resolve the phylogeny of a rare pathogen.

Publisher

American Society for Microbiology

Subject

Genetics,Immunology and Microbiology (miscellaneous),Molecular Biology

Link

https://journals.asm.org/doi/pdf/10.1128/MRA.00613-21

Reference19 articles.

1. Über Ausscheidung von Fettfarbstoffen (Lipochromen) seitens gewisser Spaltpilze;Zopf W;Ber Dtsch Bot Ges,1891

2. Jones AL, Goodfellow ML. 2012. Genus IV. Rhodococcus (Zopf 1891) emend Goodfellow, Alderson and Chun 1998a, p 437–477. In Goodfellow M, Kampfer P, Busse HJ, Trujillo ME, Suzuki K, Ludwig W, Whitman WBV (ed), Bergey’s manual of systematic bacteriology, 2nd ed, vol 5. The Actinobacteria, part A. Springer, New York, NY.

3. Current taxonomy of Rhodococcus species and their role in infections

4. Next-generation systematics: An innovative approach to resolve the structure of complex prokaryotic taxa

5. Investigation of an apparent outbreak of Rhodococcus equi bacteremia