Decontamination and Annotation of the Draft Genome Sequence of the Oomycete Lagenidium giganteum ARSEF 373-Reference-Cited by-同舟云学术

Decontamination and Annotation of the Draft Genome Sequence of the Oomycete Lagenidium giganteum ARSEF 373

Published:2023-05-17 Issue:5 Volume:12 Page:
ISSN:2576-098X
Container-title:Microbiology Resource Announcements
language:en
Short-container-title:Microbiol Resour Announc

Author:

Morgan William R.¹^ORCID,Tartar Aurélien²

Affiliation:

1. Department of Biology, The College of Wooster, Wooster, Ohio, USA

2. Department of Biological Sciences, Nova Southeastern University, Fort Lauderdale, Florida, USA

Abstract

Scaffolds of a previously published Lagenidium giganteum ARSEF 373 genome assembly found at GenBank were filtered to remove contaminating sequences. Genome annotation of the 437 scaffolds (total length, 56.2 MB; GC content, 58.8%) with confirmed L. giganteum sequences identified 13,069 potential protein-coding genes, encoding at least 737 predicted secreted proteins and >100 putative translocated effectors.

Funder

USDA | National Institute of Food and Agriculture

The College of Wooster

Publisher

American Society for Microbiology

Subject

Genetics,Immunology and Microbiology (miscellaneous),Molecular Biology

Link

https://journals.asm.org/doi/pdf/10.1128/mra.01346-22

Reference22 articles.

1. Microbial control of mosquitoes and black flies

2. Transcriptome Analysis of the Entomopathogenic Oomycete Lagenidium giganteum Reveals Putative Virulence Factors

3. Glycoside hydrolases family 20 (GH20) represent putative virulence factors that are shared by animal pathogenic oomycetes, but are absent in phytopathogens

4. Database resources of the National Center for Biotechnology Information

5. Oomycete metabarcoding reveals the presence of Lagenidium spp. in phytotelmata