An improved <i>Lodderomyces elongisporus</i> NRRL YB-4239 genome assembly substantiated by its electrophoretic karyotype-Reference-Cited by-同舟云学术

An improved Lodderomyces elongisporus NRRL YB-4239 genome assembly substantiated by its electrophoretic karyotype

Published:2023-10-19 Issue:10 Volume:12 Page:
ISSN:2576-098X
Container-title:Microbiology Resource Announcements
language:en
Short-container-title:Microbiol Resour Announc

Author:

Hoyer Lois L.¹^ORCID,Hogan Elizabeth K.²,Freeman Brian A.³,Walden Kimberly K. O.²,Hernández Alvaro G.²

Affiliation:

1. Department of Pathobiology, College of Veterinary Medicine, University of Illinois Urbana-Champaign, Urbana, Illinois, USA

2. Roy. J. Carver Biotechnology Center, University of Illinois Urbana-Champaign, Urbana, Illinois, USA

3. Department of Mathematics and Computational Sciences, Millikin University, Decatur, Illinois, USA

Abstract

ABSTRACT Pacific Biosciences long-read sequencing was used to improve the genome assembly for Lodderomyces elongisporus strain NRRL YB-4239 (ATCC 11503). The new assembly included eight chromosomes that were substantiated by the electrophoretic karyotype. The nuclear genome was 16.1 Mb (37.2% GC) with 5,740 genes predicted.

Funder

HHS | NIH | National Institute of Dental and Craniofacial Research

Publisher

American Society for Microbiology

Subject

Genetics,Immunology and Microbiology (miscellaneous),Molecular Biology

Link

https://journals.asm.org/doi/pdf/10.1128/mra.00596-23

Reference19 articles.

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4. Wick RR Menzel P. 2019. Filtlong. Available from: https://github.com/rrwick/Filtlong

5. Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm

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