Urban Microbiomes in Narita, Chiba, Japan: Shotgun Metagenome Sequences of a Train Station-Reference-Cited by-同舟云学术

Urban Microbiomes in Narita, Chiba, Japan: Shotgun Metagenome Sequences of a Train Station

Published:2023-01-24 Issue:1 Volume:12 Page:
ISSN:2576-098X
Container-title:Microbiology Resource Announcements
language:en
Short-container-title:Microbiol Resour Announc

Author:

Rasmika Dewi Dewa A. P.¹²,Shiwa Yuh³⁴,Ryon Krista⁵⁶⁷,Mason Christopher E.⁵⁶⁷,Matsumoto Tetsuya¹⁸,Suzuki Haruo⁹¹⁰^ORCID

Affiliation:

1. Department of Infectious Disease, School of Medicine, International University of Health and Welfare, Narita, Chiba, Japan

2. Faculty of Medicine and Health Sciences, Udayana University, Bali, Indonesia

3. Department of Molecular Microbiology, Tokyo University of Agriculture, Tokyo, Japan

4. NODAI Genome Research Center, Tokyo University of Agriculture, Tokyo, Japan

5. Department of Physiology and Biophysics, Weill Cornell Medicine, New York, New York, USA

6. The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, Weill Cornell Medicine, New York, New York, USA

7. The WorldQuant Initiative for Quantitative Prediction, Weill Cornell Medicine, New York, New York, USA

8. Graduate School of Medicine, International University of Health and Welfare, Narita, Chiba, Japan

9. Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata, Japan

10. Faculty of Environment and Information Studies, Keio University, Fujisawa, Kanagawa, Japan

Abstract

Here, we performed shotgun metagenome sequencing of swab samples collected on floors at a train station in Narita City, Chiba, Japan. The taxonomic analysis revealed that Actinobacteria and Proteobacteria were the dominant phyla. The data will contribute to insight into the microbiome community on the surfaces of urban built environments.

Publisher

American Society for Microbiology

Subject

Genetics,Immunology and Microbiology (miscellaneous),Molecular Biology

Link

https://journals.asm.org/doi/pdf/10.1128/mra.01092-22

Reference11 articles.

1. Geospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomics

2. A global metagenomic map of urban microbiomes and antimicrobial resistance

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4. Urban Transit System Microbial Communities Differ by Surface Type and Interaction with Humans and the Environment

5. Co-occurrence patterns of bacteria within microbiome of Moscow subway

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