Processing human frontal cortex brain tissue for population-scale SQK-LSK114 Oxford Nanopore long-read DNA sequencing SOP v1

Author:

Baker Breeana

Abstract

Processing human frontal cortex brain tissue for population-scale Oxford Nanopore long-read DNA sequencing SOP LIbrary preparation for population-scale Oxford Nanopore long-read DNA sequencing SOPAt the NIH's Center for Alzheimer's and Related Dementias (CARD) https://card.nih.gov/research-programs/long-read-sequencing we will generate long-read sequencing data from thousands of patients with Alzheimer's disease, frontotemporal dementia, Lewy body dementia, and healthy subjects. With this research, we will build a public resource consisting of long-read genome sequencing data from a large number of confirmed people with Alzheimer's disease and related dementias and healthy individuals. To generate this large-scale nanopore sequencing data we have developed a protocol for processing and long-read sequencing human frontal cortex brain tissue, targeting an N50 of ~30kb and ~30X coverage. †Correspondence to: Kimberley Billingsley billingsleykj@nih.govAcknowledgements:We would like to thank the Nanopore team (Androo Markham & Jessica Anderson) and the whole CARD long-read team listed below => UCSC: Benedict Paten, Trevor Pesout, Paolo Carnevali, Mira Mastoras, Melissa Meredith, Jean Monlong, Ryan Lorig-Roach, Mobin Asri; NE: Miten Jain; NCI: Mikhail Kolmogorov; NHGRI: Adam Phillippy, Arang Rhie; Baylor: Fritz Sedlazeck, Farhang Jaryani; JHU: Winston Timp; NIA: Cornelis Blauwendraat, Kimberley Billingsley, Pilar Alvarez Jerez, Laksh Malik, Breeana Baker, Maysa Abdelhalim, Kensuke Daida, Rylee Genner, Abigail Miano-Burkhardt, Caroline Pantazis;

Publisher

ZappyLab, Inc.

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