Grid: A Python library for molecular integration, interpolation, differentiation, and more

Author:

Tehrani Alireza1ORCID,Yang Xiaotian Derrick2,Martínez-González Marco2ORCID,Pujal Leila1ORCID,Hernández-Esparza Raymundo23ORCID,Chan Matthew2ORCID,Vöhringer-Martinez Esteban4ORCID,Verstraelen Toon5ORCID,Ayers Paul W.2ORCID,Heidar-Zadeh Farnaz1ORCID

Affiliation:

1. Department of Chemistry, Queen’s University 1 , Kingston, Ontario K7L-3N6, Canada

2. Department of Chemistry and Chemical Biology, McMaster University 2 , Hamilton, Ontario L8S-4L8, Canada

3. Leadership Computing Facility, Argonne National Laboratory 3 , Lemont, Illinois 60439, USA

4. Departamento de Físico Química, Facultad de Ciencias Químicas, Universidad de Concepcíon 4 , 4070371 Concepción, Chile

5. Center for Molecular Modeling (CMM), Ghent University 5 , Technologiepark 46, B-9052 Zwijnaarde, Belgium

Abstract

Grid is a free and open-source Python library for constructing numerical grids to integrate, interpolate, and differentiate functions (e.g., molecular properties), with a strong emphasis on facilitating these operations in computational chemistry and conceptual density functional theory. Although designed, maintained, and released as a stand-alone Python library, Grid was originally developed for molecular integration, interpolation, and solving the Poisson equation in the HORTON and ChemTools packages. Grid is designed to be easy to use, extend, and maintain; this is why we use Python and adopt many principles of modern software development, including comprehensive documentation, extensive testing, continuous integration/delivery protocols, and package management. We leverage popular scientific packages, such as NumPy and SciPy, to ensure high efficiency and optimized performance in grid development. This article is the official release note of the Grid library showcasing its unique functionality and scope.

Funder

Natural Sciences and Engineering Research Council of Canada

Fonds Wetenschappelijk Onderzoek

Fondo Nacional de Desarrollo CientÃ-fico y TecnolÃgico

Bijzonder Onderzoeksfonds UGent

Compute Canada

Vlaams Supercomputer Centrum

European Commission

Canada Research Chairs

Publisher

AIP Publishing

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