Extension of the force-matching method to coarse-grained models with axially symmetric sites to produce transferable force fields: Application to the UNRES model of proteins-Reference-Cited by-同舟云学术

Extension of the force-matching method to coarse-grained models with axially symmetric sites to produce transferable force fields: Application to the UNRES model of proteins

Published:2020-02-07 Issue:5 Volume:152 Page:054902
ISSN:0021-9606
Container-title:The Journal of Chemical Physics
language:en
Short-container-title:J. Chem. Phys.

Author:

Liwo Adam¹²^ORCID,Czaplewski Cezary¹^ORCID

Affiliation:

1. Faculty of Chemistry, University of Gdańsk, ul. Wita-Stwosza 63, 80-308 Gdańsk, Poland

2. School of Computational Sciences, Korea Institute for Advanced Study, 87 Hoegiro, Dongdaemun-gu, 130-722 Seoul, South Korea

Funder

Narodowe Centrum Nauki

Uniwersytet Warszawski

Publisher

AIP Publishing

Subject

Physical and Theoretical Chemistry,General Physics and Astronomy

Link

http://aip.scitation.org/doi/pdf/10.1063/1.5138991

Reference65 articles.

1. Discretized model of proteins. I. Monte Carlo study of cooperativity in homopolypeptides

2. Reduced models of proteins and their applications

3. A united-residue force field for off-lattice protein-structure simulations. II. Parameterization of short-range interactions and determination of weights of energy terms by Z-score optimization

4. Coarse-grained models for proteins

5. Multiscale modeling of biomolecular systems: in serial and in parallel

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